Results 61 - 80 of 89 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23150 | 5' | -61 | NC_005178.1 | + | 25181 | 0.72 | 0.12716 |
Target: 5'- aGGCCGCCgGuAgUGGCC-UGGGCGgCa -3' miRNA: 3'- -CCGGCGGgU-UgACCGGuACCUGCgGa -5' |
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23150 | 5' | -61 | NC_005178.1 | + | 25409 | 0.7 | 0.154205 |
Target: 5'- aGGCgGCCCGGaucaaGGCgAUGGuCGCCg -3' miRNA: 3'- -CCGgCGGGUUga---CCGgUACCuGCGGa -5' |
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23150 | 5' | -61 | NC_005178.1 | + | 25443 | 0.67 | 0.255232 |
Target: 5'- cGGCgCGCCCAuc-GGCCA-GGccCGCCa -3' miRNA: 3'- -CCG-GCGGGUugaCCGGUaCCu-GCGGa -5' |
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23150 | 5' | -61 | NC_005178.1 | + | 25830 | 0.67 | 0.289599 |
Target: 5'- cGGCaCGUCUGACgccaUGGCCGUGGcCGgCa -3' miRNA: 3'- -CCG-GCGGGUUG----ACCGGUACCuGCgGa -5' |
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23150 | 5' | -61 | NC_005178.1 | + | 25919 | 0.7 | 0.167321 |
Target: 5'- uGGUCa-CCAGcCUGGCCAgcgGGAUGCCa -3' miRNA: 3'- -CCGGcgGGUU-GACCGGUa--CCUGCGGa -5' |
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23150 | 5' | -61 | NC_005178.1 | + | 26397 | 0.71 | 0.134405 |
Target: 5'- aGGaaGCCCAggGCggcGGCCA-GGGCGCCc -3' miRNA: 3'- -CCggCGGGU--UGa--CCGGUaCCUGCGGa -5' |
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23150 | 5' | -61 | NC_005178.1 | + | 26607 | 1.09 | 0.00015 |
Target: 5'- gGGCCGCCCAACUGGCCAUGGACGCCUa -3' miRNA: 3'- -CCGGCGGGUUGACCGGUACCUGCGGA- -5' |
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23150 | 5' | -61 | NC_005178.1 | + | 26707 | 0.76 | 0.062617 |
Target: 5'- cGuuGCCgGGgUGGCCAaGGGCGCCUg -3' miRNA: 3'- cCggCGGgUUgACCGGUaCCUGCGGA- -5' |
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23150 | 5' | -61 | NC_005178.1 | + | 27455 | 0.66 | 0.31963 |
Target: 5'- cGGCgGCCCAGCgcaucaGCC-UGGAccagaagauCGCCg -3' miRNA: 3'- -CCGgCGGGUUGac----CGGuACCU---------GCGGa -5' |
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23150 | 5' | -61 | NC_005178.1 | + | 27657 | 0.68 | 0.224282 |
Target: 5'- uGCCGCCgCuGCcgUGGgCAUGGGCGCg- -3' miRNA: 3'- cCGGCGG-GuUG--ACCgGUACCUGCGga -5' |
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23150 | 5' | -61 | NC_005178.1 | + | 27878 | 0.69 | 0.19141 |
Target: 5'- aGGCCGCCCAgggcaACUGGgUCAacgGGGCGaCg -3' miRNA: 3'- -CCGGCGGGU-----UGACC-GGUa--CCUGCgGa -5' |
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23150 | 5' | -61 | NC_005178.1 | + | 28253 | 0.7 | 0.181428 |
Target: 5'- uGCCGCCUcGCUGGCCGc---CGCCa -3' miRNA: 3'- cCGGCGGGuUGACCGGUaccuGCGGa -5' |
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23150 | 5' | -61 | NC_005178.1 | + | 28315 | 0.67 | 0.255232 |
Target: 5'- gGGCCGCUgGAgUGGC--UGGugGCg- -3' miRNA: 3'- -CCGGCGGgUUgACCGguACCugCGga -5' |
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23150 | 5' | -61 | NC_005178.1 | + | 28552 | 0.67 | 0.275434 |
Target: 5'- gGGCCGUCC-GCcGcGCCAccggGGGCGUCg -3' miRNA: 3'- -CCGGCGGGuUGaC-CGGUa---CCUGCGGa -5' |
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23150 | 5' | -61 | NC_005178.1 | + | 28648 | 0.67 | 0.289599 |
Target: 5'- gGGCCGaUCCuGCUGGCCcagggucUGGAUGUa- -3' miRNA: 3'- -CCGGC-GGGuUGACCGGu------ACCUGCGga -5' |
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23150 | 5' | -61 | NC_005178.1 | + | 28788 | 0.73 | 0.096082 |
Target: 5'- cGCCGCCCGcacGCUGGCCAaGu-CGCCc -3' miRNA: 3'- cCGGCGGGU---UGACCGGUaCcuGCGGa -5' |
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23150 | 5' | -61 | NC_005178.1 | + | 28980 | 0.67 | 0.268561 |
Target: 5'- uGCgCGCCC--CUGGCC-UGGGCGgCa -3' miRNA: 3'- cCG-GCGGGuuGACCGGuACCUGCgGa -5' |
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23150 | 5' | -61 | NC_005178.1 | + | 30540 | 0.66 | 0.311909 |
Target: 5'- gGGCUGUgCAACaUGGCCuuccucGCGCCUg -3' miRNA: 3'- -CCGGCGgGUUG-ACCGGuacc--UGCGGA- -5' |
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23150 | 5' | -61 | NC_005178.1 | + | 31296 | 0.69 | 0.207283 |
Target: 5'- aGCCGugaCCCAGCgccgGGCUAUGcgccuGGCGCCg -3' miRNA: 3'- cCGGC---GGGUUGa---CCGGUAC-----CUGCGGa -5' |
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23150 | 5' | -61 | NC_005178.1 | + | 32201 | 0.7 | 0.171911 |
Target: 5'- cGCCGacaCCGAgcguUUGGCCAUcGACGCCg -3' miRNA: 3'- cCGGCg--GGUU----GACCGGUAcCUGCGGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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