miRNA display CGI


Results 41 - 60 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23150 5' -61 NC_005178.1 + 20381 0.74 0.090794
Target:  5'- -aCCGCCCugaAGCcGGCCcUGGACGCCc -3'
miRNA:   3'- ccGGCGGG---UUGaCCGGuACCUGCGGa -5'
23150 5' -61 NC_005178.1 + 18525 0.69 0.207283
Target:  5'- --gUGCCCGACUGGaUCA-GGACGCUg -3'
miRNA:   3'- ccgGCGGGUUGACC-GGUaCCUGCGGa -5'
23150 5' -61 NC_005178.1 + 18184 0.67 0.282446
Target:  5'- uGGCgGUUCGGCUGcGCgGUGG-CGUCUa -3'
miRNA:   3'- -CCGgCGGGUUGAC-CGgUACCuGCGGA- -5'
23150 5' -61 NC_005178.1 + 17658 0.66 0.31963
Target:  5'- cGCCaGCCCGGCacauCCAUaGGGCGCCc -3'
miRNA:   3'- cCGG-CGGGUUGacc-GGUA-CCUGCGGa -5'
23150 5' -61 NC_005178.1 + 17339 0.71 0.142028
Target:  5'- aGGUCGCCCAGCUcGGCagcccGCGCCg -3'
miRNA:   3'- -CCGGCGGGUUGA-CCGguaccUGCGGa -5'
23150 5' -61 NC_005178.1 + 17144 0.66 0.314981
Target:  5'- cGGCCaCCCAugcccgagcgcugacGgUGGCCAaGGcgucACGCCUg -3'
miRNA:   3'- -CCGGcGGGU---------------UgACCGGUaCC----UGCGGA- -5'
23150 5' -61 NC_005178.1 + 17127 0.69 0.201869
Target:  5'- aGGCCgaggguuucGCgCAGCuUGGCCAgguUGGuCGCCUg -3'
miRNA:   3'- -CCGG---------CGgGUUG-ACCGGU---ACCuGCGGA- -5'
23150 5' -61 NC_005178.1 + 16703 0.7 0.167321
Target:  5'- aGGCauCGCCCAACUGaGCC---GGCGCCc -3'
miRNA:   3'- -CCG--GCGGGUUGAC-CGGuacCUGCGGa -5'
23150 5' -61 NC_005178.1 + 16592 0.67 0.282446
Target:  5'- -aCCGCCC--CUGGUCAagcUGGGCGUCc -3'
miRNA:   3'- ccGGCGGGuuGACCGGU---ACCUGCGGa -5'
23150 5' -61 NC_005178.1 + 16561 0.67 0.289599
Target:  5'- gGGCCGaCCUGGCc-GCCAUGGcaACGUCa -3'
miRNA:   3'- -CCGGC-GGGUUGacCGGUACC--UGCGGa -5'
23150 5' -61 NC_005178.1 + 16414 0.66 0.31963
Target:  5'- aGGUgCGCCaugaccuACUGGCUgcGGAUGCCc -3'
miRNA:   3'- -CCG-GCGGgu-----UGACCGGuaCCUGCGGa -5'
23150 5' -61 NC_005178.1 + 15934 0.66 0.31963
Target:  5'- aGCCGCCgagUAACcGGCCAUcuuCGCCUg -3'
miRNA:   3'- cCGGCGG---GUUGaCCGGUAccuGCGGA- -5'
23150 5' -61 NC_005178.1 + 15778 0.74 0.090794
Target:  5'- cGCCGCCUGGCUGGCguUGGAaagcggagcggUGCCc -3'
miRNA:   3'- cCGGCGGGUUGACCGguACCU-----------GCGGa -5'
23150 5' -61 NC_005178.1 + 15284 0.66 0.327494
Target:  5'- cGCCGCCUGGCgGGCCAgccUGGcgguCGgCUu -3'
miRNA:   3'- cCGGCGGGUUGaCCGGU---ACCu---GCgGA- -5'
23150 5' -61 NC_005178.1 + 15261 0.67 0.255232
Target:  5'- cGGCCGCagaccaCGACgaUGGCCcc-GACGCCc -3'
miRNA:   3'- -CCGGCGg-----GUUG--ACCGGuacCUGCGGa -5'
23150 5' -61 NC_005178.1 + 14736 0.86 0.009314
Target:  5'- cGGUCGCUCAGCUGGCgGaUGGACGCCUc -3'
miRNA:   3'- -CCGGCGGGUUGACCGgU-ACCUGCGGA- -5'
23150 5' -61 NC_005178.1 + 14253 0.67 0.257854
Target:  5'- aGGCgaGCCCuGGCgcuguucgucaagggUGGCCAgaucggGGACGCCc -3'
miRNA:   3'- -CCGg-CGGG-UUG---------------ACCGGUa-----CCUGCGGa -5'
23150 5' -61 NC_005178.1 + 14182 0.69 0.207283
Target:  5'- -aUCGCCCGACUGccGCCcugGUGcGACGCCc -3'
miRNA:   3'- ccGGCGGGUUGAC--CGG---UAC-CUGCGGa -5'
23150 5' -61 NC_005178.1 + 14077 0.69 0.212822
Target:  5'- cGGCCGagCAGCgGGCCGgcuucgcgccGGGCGCCc -3'
miRNA:   3'- -CCGGCggGUUGaCCGGUa---------CCUGCGGa -5'
23150 5' -61 NC_005178.1 + 13995 0.67 0.289599
Target:  5'- cGGuuGCCCgAGCUGGuggaCCAcccGGACgGCCa -3'
miRNA:   3'- -CCggCGGG-UUGACC----GGUa--CCUG-CGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.