Results 61 - 80 of 89 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23150 | 5' | -61 | NC_005178.1 | + | 13887 | 0.7 | 0.15847 |
Target: 5'- cGCCGCCCGGCgugaacgGGCCAgcgcGGAcuaugaguauuuCGCCc -3' miRNA: 3'- cCGGCGGGUUGa------CCGGUa---CCU------------GCGGa -5' |
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23150 | 5' | -61 | NC_005178.1 | + | 12657 | 0.7 | 0.162841 |
Target: 5'- cGGCgGCCgGcgcGCUGGCg--GGugGCCUg -3' miRNA: 3'- -CCGgCGGgU---UGACCGguaCCugCGGA- -5' |
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23150 | 5' | -61 | NC_005178.1 | + | 12370 | 0.67 | 0.282446 |
Target: 5'- aGCC-CCCGGCgaaGCCAUGGuugacCGCCa -3' miRNA: 3'- cCGGcGGGUUGac-CGGUACCu----GCGGa -5' |
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23150 | 5' | -61 | NC_005178.1 | + | 12202 | 0.77 | 0.048275 |
Target: 5'- cGGCCaGCCUGGCUGG-CAUGGuCGCCa -3' miRNA: 3'- -CCGG-CGGGUUGACCgGUACCuGCGGa -5' |
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23150 | 5' | -61 | NC_005178.1 | + | 12098 | 0.67 | 0.268561 |
Target: 5'- uGGUCGCgUGGCgggccUGGCCgAUGGGCGCg- -3' miRNA: 3'- -CCGGCGgGUUG-----ACCGG-UACCUGCGga -5' |
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23150 | 5' | -61 | NC_005178.1 | + | 12049 | 0.67 | 0.289599 |
Target: 5'- uGGCCcugGCCCuguucCUGGUgAUGGuugcgaccaGCGCCUg -3' miRNA: 3'- -CCGG---CGGGuu---GACCGgUACC---------UGCGGA- -5' |
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23150 | 5' | -61 | NC_005178.1 | + | 11758 | 0.66 | 0.327494 |
Target: 5'- cGGCCgugGCCCGA---GCCAUGGGgguucCGCCg -3' miRNA: 3'- -CCGG---CGGGUUgacCGGUACCU-----GCGGa -5' |
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23150 | 5' | -61 | NC_005178.1 | + | 11715 | 0.66 | 0.31963 |
Target: 5'- uGCCGgCCAc--GGCCAUGG-CGUCa -3' miRNA: 3'- cCGGCgGGUugaCCGGUACCuGCGGa -5' |
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23150 | 5' | -61 | NC_005178.1 | + | 10726 | 0.71 | 0.144391 |
Target: 5'- gGGCCgaagacaGCCCcGCUGGCCAcagcgcgucccggcUGGAagGCCUg -3' miRNA: 3'- -CCGG-------CGGGuUGACCGGU--------------ACCUg-CGGA- -5' |
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23150 | 5' | -61 | NC_005178.1 | + | 9832 | 0.75 | 0.066324 |
Target: 5'- cGCCaagGCCCAGCUGGgCAUGGACGaugacaCCUa -3' miRNA: 3'- cCGG---CGGGUUGACCgGUACCUGC------GGA- -5' |
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23150 | 5' | -61 | NC_005178.1 | + | 9486 | 0.73 | 0.104563 |
Target: 5'- gGGUCGCCaucCUGGCCA-GGuCGCCa -3' miRNA: 3'- -CCGGCGGguuGACCGGUaCCuGCGGa -5' |
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23150 | 5' | -61 | NC_005178.1 | + | 9357 | 0.66 | 0.296894 |
Target: 5'- uGCCG-CCAGCagucGCCA-GGGCGCCg -3' miRNA: 3'- cCGGCgGGUUGac--CGGUaCCUGCGGa -5' |
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23150 | 5' | -61 | NC_005178.1 | + | 8833 | 0.66 | 0.327494 |
Target: 5'- cGCCGCCCuuGCcGGCCcacauGUcGGcCGCCa -3' miRNA: 3'- cCGGCGGGu-UGaCCGG-----UA-CCuGCGGa -5' |
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23150 | 5' | -61 | NC_005178.1 | + | 8572 | 0.73 | 0.107543 |
Target: 5'- uGCCGCCCA---GGCCAgGGGCGCg- -3' miRNA: 3'- cCGGCGGGUugaCCGGUaCCUGCGga -5' |
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23150 | 5' | -61 | NC_005178.1 | + | 7391 | 0.66 | 0.311909 |
Target: 5'- uGGCCGCCCGuauaGCC---GACGCCa -3' miRNA: 3'- -CCGGCGGGUugacCGGuacCUGCGGa -5' |
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23150 | 5' | -61 | NC_005178.1 | + | 7300 | 0.74 | 0.083377 |
Target: 5'- cGCCGCCCGGCUGcuccaGCgCAUGGGggucCGCCUu -3' miRNA: 3'- cCGGCGGGUUGAC-----CG-GUACCU----GCGGA- -5' |
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23150 | 5' | -61 | NC_005178.1 | + | 6510 | 0.66 | 0.327494 |
Target: 5'- cGCCGCCaccgugcgcaugCggUUGGCCAagGGaAUGCCUc -3' miRNA: 3'- cCGGCGG------------GuuGACCGGUa-CC-UGCGGA- -5' |
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23150 | 5' | -61 | NC_005178.1 | + | 4649 | 0.66 | 0.296894 |
Target: 5'- -aCCaCCCAACUGGCCaAUGGcAUgGCCg -3' miRNA: 3'- ccGGcGGGUUGACCGG-UACC-UG-CGGa -5' |
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23150 | 5' | -61 | NC_005178.1 | + | 4532 | 0.68 | 0.248773 |
Target: 5'- cGGCCuGCCCAucgaGCC--GGACGCCg -3' miRNA: 3'- -CCGG-CGGGUugacCGGuaCCUGCGGa -5' |
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23150 | 5' | -61 | NC_005178.1 | + | 4082 | 0.66 | 0.314981 |
Target: 5'- cGGCga-CCAGgUGGCCGUGGgcuacgacauccacgACGCCa -3' miRNA: 3'- -CCGgcgGGUUgACCGGUACC---------------UGCGGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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