Results 81 - 89 of 89 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 23150 | 5' | -61 | NC_005178.1 | + | 4014 | 0.67 | 0.282446 |
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Target: 5'- aGCCaUCCAAUUuaGGCCAUGG-CGCUUg -3' miRNA: 3'- cCGGcGGGUUGA--CCGGUACCuGCGGA- -5' |
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| 23150 | 5' | -61 | NC_005178.1 | + | 3722 | 0.66 | 0.3355 |
|
Target: 5'- uGGaCCGCCaggccaAGCUGGCCAccuucaagcUGacGCGCCg -3' miRNA: 3'- -CC-GGCGGg-----UUGACCGGU---------ACc-UGCGGa -5' |
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| 23150 | 5' | -61 | NC_005178.1 | + | 3643 | 0.69 | 0.207283 |
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Target: 5'- aGGCCGCCgAGCaucgccGCCAggcgcggcaGGACGCCc -3' miRNA: 3'- -CCGGCGGgUUGac----CGGUa--------CCUGCGGa -5' |
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| 23150 | 5' | -61 | NC_005178.1 | + | 3064 | 0.68 | 0.230206 |
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Target: 5'- cGCCGCCCGGacaUGagcguucCCGacUGGGCGCCUg -3' miRNA: 3'- cCGGCGGGUUg--ACc------GGU--ACCUGCGGA- -5' |
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| 23150 | 5' | -61 | NC_005178.1 | + | 2974 | 0.66 | 0.318852 |
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Target: 5'- cGGCCGCCCGagcgcggaugGCUGccgagcgugcgcaGCC-UGGAgCGCUUc -3' miRNA: 3'- -CCGGCGGGU----------UGAC-------------CGGuACCU-GCGGA- -5' |
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| 23150 | 5' | -61 | NC_005178.1 | + | 2822 | 0.67 | 0.282446 |
|
Target: 5'- cGGCCGaCCCgAACgacGGUUucagGGAUGCCg -3' miRNA: 3'- -CCGGC-GGG-UUGa--CCGGua--CCUGCGGa -5' |
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| 23150 | 5' | -61 | NC_005178.1 | + | 2760 | 0.66 | 0.311909 |
|
Target: 5'- cGGuCCGCCaggagacgCAGCUGGCCcUGGucgaaaccaacCGCCa -3' miRNA: 3'- -CC-GGCGG--------GUUGACCGGuACCu----------GCGGa -5' |
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| 23150 | 5' | -61 | NC_005178.1 | + | 2731 | 0.69 | 0.207283 |
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Target: 5'- cGCCGCCCug--GGCgA-GGugGCCa -3' miRNA: 3'- cCGGCGGGuugaCCGgUaCCugCGGa -5' |
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| 23150 | 5' | -61 | NC_005178.1 | + | 1035 | 0.66 | 0.3355 |
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Target: 5'- cGGCCGuCCCAuc--GCCAcuagcaaaucuUGGACGCgCUg -3' miRNA: 3'- -CCGGC-GGGUugacCGGU-----------ACCUGCG-GA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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