miRNA display CGI


Results 61 - 80 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23150 5' -61 NC_005178.1 + 22549 0.72 0.116969
Target:  5'- gGGaCCGCCC--CUGGCCAcGGAUgGCCa -3'
miRNA:   3'- -CC-GGCGGGuuGACCGGUaCCUG-CGGa -5'
23150 5' -61 NC_005178.1 + 20381 0.74 0.090794
Target:  5'- -aCCGCCCugaAGCcGGCCcUGGACGCCc -3'
miRNA:   3'- ccGGCGGG---UUGaCCGGuACCUGCGGa -5'
23150 5' -61 NC_005178.1 + 27657 0.68 0.224282
Target:  5'- uGCCGCCgCuGCcgUGGgCAUGGGCGCg- -3'
miRNA:   3'- cCGGCGG-GuUG--ACCgGUACCUGCGga -5'
23150 5' -61 NC_005178.1 + 3064 0.68 0.230206
Target:  5'- cGCCGCCCGGacaUGagcguucCCGacUGGGCGCCUg -3'
miRNA:   3'- cCGGCGGGUUg--ACc------GGU--ACCUGCGGA- -5'
23150 5' -61 NC_005178.1 + 4532 0.68 0.248773
Target:  5'- cGGCCuGCCCAucgaGCC--GGACGCCg -3'
miRNA:   3'- -CCGG-CGGGUugacCGGuaCCUGCGGa -5'
23150 5' -61 NC_005178.1 + 2974 0.66 0.318852
Target:  5'- cGGCCGCCCGagcgcggaugGCUGccgagcgugcgcaGCC-UGGAgCGCUUc -3'
miRNA:   3'- -CCGGCGGGU----------UGAC-------------CGGuACCU-GCGGA- -5'
23150 5' -61 NC_005178.1 + 17144 0.66 0.314981
Target:  5'- cGGCCaCCCAugcccgagcgcugacGgUGGCCAaGGcgucACGCCUg -3'
miRNA:   3'- -CCGGcGGGU---------------UgACCGGUaCC----UGCGGA- -5'
23150 5' -61 NC_005178.1 + 4082 0.66 0.314981
Target:  5'- cGGCga-CCAGgUGGCCGUGGgcuacgacauccacgACGCCa -3'
miRNA:   3'- -CCGgcgGGUUgACCGGUACC---------------UGCGGa -5'
23150 5' -61 NC_005178.1 + 30540 0.66 0.311909
Target:  5'- gGGCUGUgCAACaUGGCCuuccucGCGCCUg -3'
miRNA:   3'- -CCGGCGgGUUG-ACCGGuacc--UGCGGA- -5'
23150 5' -61 NC_005178.1 + 2760 0.66 0.311909
Target:  5'- cGGuCCGCCaggagacgCAGCUGGCCcUGGucgaaaccaacCGCCa -3'
miRNA:   3'- -CC-GGCGG--------GUUGACCGGuACCu----------GCGGa -5'
23150 5' -61 NC_005178.1 + 35379 0.66 0.302084
Target:  5'- cGGCUGCugacgaacaCCAGCgagGGCCAacuggccccggcgcUGGcCGCCa -3'
miRNA:   3'- -CCGGCG---------GGUUGa--CCGGU--------------ACCuGCGGa -5'
23150 5' -61 NC_005178.1 + 4649 0.66 0.296894
Target:  5'- -aCCaCCCAACUGGCCaAUGGcAUgGCCg -3'
miRNA:   3'- ccGGcGGGUUGACCGG-UACC-UG-CGGa -5'
23150 5' -61 NC_005178.1 + 25830 0.67 0.289599
Target:  5'- cGGCaCGUCUGACgccaUGGCCGUGGcCGgCa -3'
miRNA:   3'- -CCG-GCGGGUUG----ACCGGUACCuGCgGa -5'
23150 5' -61 NC_005178.1 + 16561 0.67 0.289599
Target:  5'- gGGCCGaCCUGGCc-GCCAUGGcaACGUCa -3'
miRNA:   3'- -CCGGC-GGGUUGacCGGUACC--UGCGGa -5'
23150 5' -61 NC_005178.1 + 13995 0.67 0.289599
Target:  5'- cGGuuGCCCgAGCUGGuggaCCAcccGGACgGCCa -3'
miRNA:   3'- -CCggCGGG-UUGACC----GGUa--CCUG-CGGa -5'
23150 5' -61 NC_005178.1 + 12049 0.67 0.289599
Target:  5'- uGGCCcugGCCCuguucCUGGUgAUGGuugcgaccaGCGCCUg -3'
miRNA:   3'- -CCGG---CGGGuu---GACCGgUACC---------UGCGGA- -5'
23150 5' -61 NC_005178.1 + 28980 0.67 0.268561
Target:  5'- uGCgCGCCC--CUGGCC-UGGGCGgCa -3'
miRNA:   3'- cCG-GCGGGuuGACCGGuACCUGCgGa -5'
23150 5' -61 NC_005178.1 + 12098 0.67 0.268561
Target:  5'- uGGUCGCgUGGCgggccUGGCCgAUGGGCGCg- -3'
miRNA:   3'- -CCGGCGgGUUG-----ACCGG-UACCUGCGga -5'
23150 5' -61 NC_005178.1 + 28315 0.67 0.255232
Target:  5'- gGGCCGCUgGAgUGGC--UGGugGCg- -3'
miRNA:   3'- -CCGGCGGgUUgACCGguACCugCGga -5'
23150 5' -61 NC_005178.1 + 15261 0.67 0.255232
Target:  5'- cGGCCGCagaccaCGACgaUGGCCcc-GACGCCc -3'
miRNA:   3'- -CCGGCGg-----GUUG--ACCGGuacCUGCGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.