miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23151 3' -55.3 NC_005178.1 + 20837 0.66 0.559291
Target:  5'- -gCGAGGACCaGGGCGCCggcucagUUGGGc-- -3'
miRNA:   3'- caGCUCUUGGaCCCGUGG-------GACCUuug -5'
23151 3' -55.3 NC_005178.1 + 14875 0.66 0.594273
Target:  5'- cUCG---GCCUGGGCgaggucGCCCUGGGc-- -3'
miRNA:   3'- cAGCucuUGGACCCG------UGGGACCUuug -5'
23151 3' -55.3 NC_005178.1 + 12238 0.66 0.602229
Target:  5'- aUCGAGucggacaguuccucGACCUGGuccGCACCCUGcuGAAGg -3'
miRNA:   3'- cAGCUC--------------UUGGACC---CGUGGGAC--CUUUg -5'
23151 3' -55.3 NC_005178.1 + 4273 0.67 0.524908
Target:  5'- -aCGAGAuucgcGCCgagcgugacggcGGGUauGCCCUGGAAAUg -3'
miRNA:   3'- caGCUCU-----UGGa-----------CCCG--UGGGACCUUUG- -5'
23151 3' -55.3 NC_005178.1 + 9681 0.67 0.505313
Target:  5'- aGUUGc---CCUGGGCGgCCUGGAGGu -3'
miRNA:   3'- -CAGCucuuGGACCCGUgGGACCUUUg -5'
23151 3' -55.3 NC_005178.1 + 30080 0.69 0.422561
Target:  5'- uUCGcuccaGGCCaGGGUgauGCCCUGGAAGCg -3'
miRNA:   3'- cAGCuc---UUGGaCCCG---UGGGACCUUUG- -5'
23151 3' -55.3 NC_005178.1 + 17705 0.7 0.357229
Target:  5'- uUCGGGAgcagACCUugacCACCCUGGAGACg -3'
miRNA:   3'- cAGCUCU----UGGAccc-GUGGGACCUUUG- -5'
23151 3' -55.3 NC_005178.1 + 34561 0.72 0.255687
Target:  5'- aUCGAGuuCCUGGGCguGCCUaccgGGGAGCu -3'
miRNA:   3'- cAGCUCuuGGACCCG--UGGGa---CCUUUG- -5'
23151 3' -55.3 NC_005178.1 + 21672 0.72 0.26258
Target:  5'- gGUCGAaGGCCUGcGGCAaccacucccguCCCUGGAGGg -3'
miRNA:   3'- -CAGCUcUUGGAC-CCGU-----------GGGACCUUUg -5'
23151 3' -55.3 NC_005178.1 + 19553 0.73 0.235897
Target:  5'- ----uGGAgCUGGGCACCCUGGGcAGCc -3'
miRNA:   3'- cagcuCUUgGACCCGUGGGACCU-UUG- -5'
23151 3' -55.3 NC_005178.1 + 26668 1.09 0.000561
Target:  5'- cGUCGAGAACCUGGGCACCCUGGAAACc -3'
miRNA:   3'- -CAGCUCUUGGACCCGUGGGACCUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.