miRNA display CGI


Results 21 - 38 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23151 5' -62.1 NC_005178.1 + 21060 0.68 0.212314
Target:  5'- -gGUUGCCGGagcGGUugaGGaCCAGGaGGgGCCa -3'
miRNA:   3'- ggCAACGGCC---CCA---CC-GGUUC-CCgCGG- -5'
23151 5' -62.1 NC_005178.1 + 23338 0.66 0.29436
Target:  5'- gCCGgcGCCcuGGGGgaaguccaUGGCCA--GGCGCg -3'
miRNA:   3'- -GGCaaCGG--CCCC--------ACCGGUucCCGCGg -5'
23151 5' -62.1 NC_005178.1 + 23440 0.69 0.176833
Target:  5'- gCCGacGCCcaGGGcgacGGCC-AGGGCGCCc -3'
miRNA:   3'- -GGCaaCGGc-CCCa---CCGGuUCCCGCGG- -5'
23151 5' -62.1 NC_005178.1 + 23694 0.66 0.324147
Target:  5'- aCCcaUGCCGGcaagccGGUGGCgcAGGGCGaCg -3'
miRNA:   3'- -GGcaACGGCC------CCACCGguUCCCGCgG- -5'
23151 5' -62.1 NC_005178.1 + 24277 0.67 0.246823
Target:  5'- cUCGgcGCCccGGUGGUUGuguccacAGGGCGCCg -3'
miRNA:   3'- -GGCaaCGGccCCACCGGU-------UCCCGCGG- -5'
23151 5' -62.1 NC_005178.1 + 24409 0.68 0.212314
Target:  5'- aCCGUUGCCcugcgcuauaaGGGcaucaaccUGGCCGAaggcGGcGCGCCg -3'
miRNA:   3'- -GGCAACGG-----------CCCc-------ACCGGUU----CC-CGCGG- -5'
23151 5' -62.1 NC_005178.1 + 25156 0.7 0.163306
Target:  5'- aCCGggGUCGGGcacgguUGaGCCAAGGcCGCCg -3'
miRNA:   3'- -GGCaaCGGCCCc-----AC-CGGUUCCcGCGG- -5'
23151 5' -62.1 NC_005178.1 + 26181 0.66 0.29436
Target:  5'- ----gGCgCGGcGGUGGCCGcugcGGGCGUg -3'
miRNA:   3'- ggcaaCG-GCC-CCACCGGUu---CCCGCGg -5'
23151 5' -62.1 NC_005178.1 + 26401 0.66 0.29436
Target:  5'- ----aGCCcagGGcGGcGGCC-AGGGCGCCc -3'
miRNA:   3'- ggcaaCGG---CC-CCaCCGGuUCCCGCGG- -5'
23151 5' -62.1 NC_005178.1 + 26705 1.12 0.000081
Target:  5'- aCCGUUGCCGGGGUGGCCAAGGGCGCCu -3'
miRNA:   3'- -GGCAACGGCCCCACCGGUUCCCGCGG- -5'
23151 5' -62.1 NC_005178.1 + 26811 0.68 0.22295
Target:  5'- ----aGCCGGGacgcgcuGUGGCCAgcGGGGCuGUCu -3'
miRNA:   3'- ggcaaCGGCCC-------CACCGGU--UCCCG-CGG- -5'
23151 5' -62.1 NC_005178.1 + 28113 0.66 0.301602
Target:  5'- uCCGgguuugGCCugGGcGGUGGCaccgauGGcGGCGCCc -3'
miRNA:   3'- -GGCaa----CGG--CC-CCACCGgu----UC-CCGCGG- -5'
23151 5' -62.1 NC_005178.1 + 31395 0.66 0.30898
Target:  5'- gCUGUUugGCUGGGGcGcGCgCGuuuGGGCGCUg -3'
miRNA:   3'- -GGCAA--CGGCCCCaC-CG-GUu--CCCGCGG- -5'
23151 5' -62.1 NC_005178.1 + 33229 0.71 0.131686
Target:  5'- gCCGagGCCGGGGaUGGaCAGcGGCGCa -3'
miRNA:   3'- -GGCaaCGGCCCC-ACCgGUUcCCGCGg -5'
23151 5' -62.1 NC_005178.1 + 33277 0.66 0.311969
Target:  5'- gCCGUcacGCuCGGcgcgaaucucgucgaGGUGaGCCAGGGcGCGCUu -3'
miRNA:   3'- -GGCAa--CG-GCC---------------CCAC-CGGUUCC-CGCGG- -5'
23151 5' -62.1 NC_005178.1 + 34636 0.66 0.323375
Target:  5'- ----aGCUGcGGcucgaccUGGCCGAGGcGCGCCa -3'
miRNA:   3'- ggcaaCGGCcCC-------ACCGGUUCC-CGCGG- -5'
23151 5' -62.1 NC_005178.1 + 34698 0.66 0.29436
Target:  5'- gCUGUaGCCGGuGcgGGCCAucaucaggucuAGGGCGUg -3'
miRNA:   3'- -GGCAaCGGCCcCa-CCGGU-----------UCCCGCGg -5'
23151 5' -62.1 NC_005178.1 + 36037 0.7 0.165055
Target:  5'- aCCGggGCCGGGGcgaaccagaaccgcuUGGCCcgcuggugggcAAcGGGUGCg -3'
miRNA:   3'- -GGCaaCGGCCCC---------------ACCGG-----------UU-CCCGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.