miRNA display CGI


Results 21 - 23 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23152 3' -60.7 NC_005178.1 + 10342 0.75 0.059005
Target:  5'- gGGCgaAGCGCGCCGGgCUGCgcuggccGAGCUGg -3'
miRNA:   3'- gUCG--UCGCGCGGCCgGAUGa------CUCGAU- -5'
23152 3' -60.7 NC_005178.1 + 24447 0.76 0.050908
Target:  5'- aGGCGGCGCGCCGGUCaucgucGAGCUGu -3'
miRNA:   3'- gUCGUCGCGCGGCCGGauga--CUCGAU- -5'
23152 3' -60.7 NC_005178.1 + 27312 1.06 0.000228
Target:  5'- gCAGCAGCGCGCCGGCCUACUGAGCUAu -3'
miRNA:   3'- -GUCGUCGCGCGGCCGGAUGACUCGAU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.