Results 1 - 20 of 20 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23152 | 5' | -56.7 | NC_005178.1 | + | 27347 | 1.09 | 0.000415 |
Target: 5'- aUGUCGCGCAGCGCGGCGAACUGAUCAg -3' miRNA: 3'- -ACAGCGCGUCGCGCCGCUUGACUAGU- -5' |
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23152 | 5' | -56.7 | NC_005178.1 | + | 12461 | 0.75 | 0.130453 |
Target: 5'- cUGUCGCuCGGUguaGCGGcCGAGCUGGUCGc -3' miRNA: 3'- -ACAGCGcGUCG---CGCC-GCUUGACUAGU- -5' |
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23152 | 5' | -56.7 | NC_005178.1 | + | 4369 | 0.73 | 0.186359 |
Target: 5'- gGUCGCGCAGCGCcGCGAcccuugaagugcagGCcgagcgGAUCGa -3' miRNA: 3'- aCAGCGCGUCGCGcCGCU--------------UGa-----CUAGU- -5' |
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23152 | 5' | -56.7 | NC_005178.1 | + | 4971 | 0.73 | 0.193146 |
Target: 5'- gGUCggccgGUGCGGUGauGCGAACUGGUCGg -3' miRNA: 3'- aCAG-----CGCGUCGCgcCGCUUGACUAGU- -5' |
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23152 | 5' | -56.7 | NC_005178.1 | + | 17984 | 0.73 | 0.20401 |
Target: 5'- cGgcgCGUGUAGCGCGuuuGCGGGCgGAUCAg -3' miRNA: 3'- aCa--GCGCGUCGCGC---CGCUUGaCUAGU- -5' |
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23152 | 5' | -56.7 | NC_005178.1 | + | 14916 | 0.72 | 0.233502 |
Target: 5'- cGUUGUGCucggcguucuGCGCGGCGA--UGGUCAg -3' miRNA: 3'- aCAGCGCGu---------CGCGCCGCUugACUAGU- -5' |
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23152 | 5' | -56.7 | NC_005178.1 | + | 5564 | 0.71 | 0.237906 |
Target: 5'- cGUCGagGCgauccgcggauucaAGCGCGGCGAAgaGGUCGu -3' miRNA: 3'- aCAGCg-CG--------------UCGCGCCGCUUgaCUAGU- -5' |
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23152 | 5' | -56.7 | NC_005178.1 | + | 13164 | 0.71 | 0.266498 |
Target: 5'- gGUCGgcUGCGGCGCGGUGAACa----- -3' miRNA: 3'- aCAGC--GCGUCGCGCCGCUUGacuagu -5' |
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23152 | 5' | -56.7 | NC_005178.1 | + | 12074 | 0.7 | 0.303166 |
Target: 5'- gGUUGCGacCAGCGCcuGGUGGAgUGGUCGc -3' miRNA: 3'- aCAGCGC--GUCGCG--CCGCUUgACUAGU- -5' |
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23152 | 5' | -56.7 | NC_005178.1 | + | 28510 | 0.7 | 0.318884 |
Target: 5'- ---aGCGCGGCGCGGCauuGCUccaGGUCGa -3' miRNA: 3'- acagCGCGUCGCGCCGcu-UGA---CUAGU- -5' |
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23152 | 5' | -56.7 | NC_005178.1 | + | 21100 | 0.69 | 0.32697 |
Target: 5'- -aUCGCGacuCAGCgugGCGGCGAGCUGG-CGg -3' miRNA: 3'- acAGCGC---GUCG---CGCCGCUUGACUaGU- -5' |
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23152 | 5' | -56.7 | NC_005178.1 | + | 7748 | 0.69 | 0.335207 |
Target: 5'- --aCGCGCAGCuuGGCGAGCaaGUCGg -3' miRNA: 3'- acaGCGCGUCGcgCCGCUUGacUAGU- -5' |
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23152 | 5' | -56.7 | NC_005178.1 | + | 10132 | 0.68 | 0.369653 |
Target: 5'- uUGUCGCGCAGCGCcuccaGCGc-CUGGa-- -3' miRNA: 3'- -ACAGCGCGUCGCGc----CGCuuGACUagu -5' |
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23152 | 5' | -56.7 | NC_005178.1 | + | 29352 | 0.68 | 0.387762 |
Target: 5'- uUGUCGUaaGC-GUGCcGCGAAUUGGUCAc -3' miRNA: 3'- -ACAGCG--CGuCGCGcCGCUUGACUAGU- -5' |
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23152 | 5' | -56.7 | NC_005178.1 | + | 27980 | 0.68 | 0.397032 |
Target: 5'- ---aGCGCAGCGCGGCGcaggGcAUCGc -3' miRNA: 3'- acagCGCGUCGCGCCGCuugaC-UAGU- -5' |
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23152 | 5' | -56.7 | NC_005178.1 | + | 25431 | 0.67 | 0.476038 |
Target: 5'- cGUCgGCGCAG-GCGGCGcGCccAUCGg -3' miRNA: 3'- aCAG-CGCGUCgCGCCGCuUGacUAGU- -5' |
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23152 | 5' | -56.7 | NC_005178.1 | + | 26457 | 0.66 | 0.486464 |
Target: 5'- ---aGCGCGGCGCugccggccgaGGUGGAUgcggGAUCAg -3' miRNA: 3'- acagCGCGUCGCG----------CCGCUUGa---CUAGU- -5' |
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23152 | 5' | -56.7 | NC_005178.1 | + | 25955 | 0.66 | 0.518363 |
Target: 5'- gGUUGCcaucCAGCaaGGCGGGCaGAUCAa -3' miRNA: 3'- aCAGCGc---GUCGcgCCGCUUGaCUAGU- -5' |
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23152 | 5' | -56.7 | NC_005178.1 | + | 10352 | 0.66 | 0.529181 |
Target: 5'- cGcCGgGCuGCGCuGGCcGAGCUGGUgGg -3' miRNA: 3'- aCaGCgCGuCGCG-CCG-CUUGACUAgU- -5' |
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23152 | 5' | -56.7 | NC_005178.1 | + | 21838 | 0.66 | 0.529181 |
Target: 5'- cGagGCGUuGCGCGGCGGcucgaUGGUCc -3' miRNA: 3'- aCagCGCGuCGCGCCGCUug---ACUAGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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