miRNA display CGI


Results 41 - 54 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23153 3' -60.5 NC_005178.1 + 11393 0.67 0.291528
Target:  5'- --cCCGCCugGuggcugaucgguGCGGCCCuGCGCc-- -3'
miRNA:   3'- caaGGUGGugC------------CGCCGGGuCGCGuag -5'
23153 3' -60.5 NC_005178.1 + 11252 0.69 0.202025
Target:  5'- --gCCGCCAUGGCGgacaguuGCCCGGCGg--- -3'
miRNA:   3'- caaGGUGGUGCCGC-------CGGGUCGCguag -5'
23153 3' -60.5 NC_005178.1 + 11092 0.66 0.33
Target:  5'- -aUCCACCuCGGcCGGC--AGCGCcgCg -3'
miRNA:   3'- caAGGUGGuGCC-GCCGggUCGCGuaG- -5'
23153 3' -60.5 NC_005178.1 + 10954 0.7 0.163073
Target:  5'- --gCCAgUugGGCGGcCCCAGCGaAUCc -3'
miRNA:   3'- caaGGUgGugCCGCC-GGGUCGCgUAG- -5'
23153 3' -60.5 NC_005178.1 + 10790 0.67 0.277152
Target:  5'- --gCCGCCAuccUGGcCGaGCCCAGCcgcgaGCGUCg -3'
miRNA:   3'- caaGGUGGU---GCC-GC-CGGGUCG-----CGUAG- -5'
23153 3' -60.5 NC_005178.1 + 10081 0.66 0.306481
Target:  5'- --gCCgACCAUa-UGGCCCGGCGCAUg -3'
miRNA:   3'- caaGG-UGGUGccGCCGGGUCGCGUAg -5'
23153 3' -60.5 NC_005178.1 + 9681 0.67 0.290795
Target:  5'- aGUUgC-CCugGGCGGCCUggaggucGGCGUAg- -3'
miRNA:   3'- -CAAgGuGGugCCGCCGGG-------UCGCGUag -5'
23153 3' -60.5 NC_005178.1 + 7301 0.73 0.107261
Target:  5'- --gCCGCC-CGGCuGCuCCAGCGCAUg -3'
miRNA:   3'- caaGGUGGuGCCGcCG-GGUCGCGUAg -5'
23153 3' -60.5 NC_005178.1 + 6236 0.7 0.177
Target:  5'- --cCCGgCGCGGCGccaggcgcauaGCCCGGCGCuggGUCa -3'
miRNA:   3'- caaGGUgGUGCCGC-----------CGGGUCGCG---UAG- -5'
23153 3' -60.5 NC_005178.1 + 5682 0.67 0.270178
Target:  5'- --aCCACCGaGGCGGUCUGGCGgaCGUUg -3'
miRNA:   3'- caaGGUGGUgCCGCCGGGUCGC--GUAG- -5'
23153 3' -60.5 NC_005178.1 + 5323 0.74 0.093027
Target:  5'- -cUCgACCA-GGCGGCCCAGgGCGg- -3'
miRNA:   3'- caAGgUGGUgCCGCCGGGUCgCGUag -5'
23153 3' -60.5 NC_005178.1 + 2967 0.68 0.250105
Target:  5'- -aUCC-UCGCGGCcGCCCgAGCGCGg- -3'
miRNA:   3'- caAGGuGGUGCCGcCGGG-UCGCGUag -5'
23153 3' -60.5 NC_005178.1 + 2447 0.66 0.322015
Target:  5'- --gCCGCCAgCGGCaGCUCGGCgGCGa- -3'
miRNA:   3'- caaGGUGGU-GCCGcCGGGUCG-CGUag -5'
23153 3' -60.5 NC_005178.1 + 1119 0.66 0.303445
Target:  5'- cUUCCACCGCGGCaauaGCCCgccaacuggguguuAGCuccagggcaguucGCGUCg -3'
miRNA:   3'- cAAGGUGGUGCCGc---CGGG--------------UCG-------------CGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.