miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23153 5' -54.9 NC_005178.1 + 27285 0.66 0.569514
Target:  5'- cAGGAaCGCCGAGcagaagcuCCAGGcGCAGCAg -3'
miRNA:   3'- -UUCUaGCGGCUCc-------GGUCCuUGUUGUa -5'
23153 5' -54.9 NC_005178.1 + 2811 0.66 0.558092
Target:  5'- -uGGUCGCCGAugcccGCCAGGGGguGCu- -3'
miRNA:   3'- uuCUAGCGGCUc----CGGUCCUUguUGua -5'
23153 5' -54.9 NC_005178.1 + 10474 0.66 0.558092
Target:  5'- gGAGAUCGUCGAGcGCUucGAACAGgGc -3'
miRNA:   3'- -UUCUAGCGGCUC-CGGucCUUGUUgUa -5'
23153 5' -54.9 NC_005178.1 + 21057 0.66 0.546735
Target:  5'- cGAGGUUGCCggagcgguuGAGGaCCAGGAGgGGCc- -3'
miRNA:   3'- -UUCUAGCGG---------CUCC-GGUCCUUgUUGua -5'
23153 5' -54.9 NC_005178.1 + 20924 0.67 0.513145
Target:  5'- cAGGA-CGCCGAGGUCAucggcgugccGGuAGCGGCAa -3'
miRNA:   3'- -UUCUaGCGGCUCCGGU----------CC-UUGUUGUa -5'
23153 5' -54.9 NC_005178.1 + 8569 0.68 0.448769
Target:  5'- -cGGUgcCGCCcAGGCCAGGGGCGcGCAg -3'
miRNA:   3'- uuCUA--GCGGcUCCGGUCCUUGU-UGUa -5'
23153 5' -54.9 NC_005178.1 + 3642 0.68 0.447734
Target:  5'- cAGGcCGCCGAGcaucgccGCCAGGcGCGGCAg -3'
miRNA:   3'- uUCUaGCGGCUC-------CGGUCCuUGUUGUa -5'
23153 5' -54.9 NC_005178.1 + 11883 0.68 0.438473
Target:  5'- cAGAUCGCCcAGGCCgugcGGGAggugcugugauGCAACGc -3'
miRNA:   3'- uUCUAGCGGcUCCGG----UCCU-----------UGUUGUa -5'
23153 5' -54.9 NC_005178.1 + 37130 0.75 0.150644
Target:  5'- ---cUCGCCGAGGuCCAGGAGCuACGc -3'
miRNA:   3'- uucuAGCGGCUCC-GGUCCUUGuUGUa -5'
23153 5' -54.9 NC_005178.1 + 33222 0.77 0.115648
Target:  5'- -uGAUCguGCCGAGGCCGGGGauggACAGCGg -3'
miRNA:   3'- uuCUAG--CGGCUCCGGUCCU----UGUUGUa -5'
23153 5' -54.9 NC_005178.1 + 27483 1.04 0.001114
Target:  5'- gAAGAUCGCCGAGGCCAGGAACAACAUg -3'
miRNA:   3'- -UUCUAGCGGCUCCGGUCCUUGUUGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.