miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23155 5' -51.2 NC_005178.1 + 22479 0.66 0.849862
Target:  5'- aGCUCGGugcGCAGGAAC--UCCuGGAa -3'
miRNA:   3'- gCGAGUCua-UGUCCUUGgcAGGuUCU- -5'
23155 5' -51.2 NC_005178.1 + 13188 0.66 0.840737
Target:  5'- uCGCcgAGGUGCuGGAGCCGUuUgGAGAa -3'
miRNA:   3'- -GCGagUCUAUGuCCUUGGCA-GgUUCU- -5'
23155 5' -51.2 NC_005178.1 + 10162 0.66 0.840737
Target:  5'- gCGCUUAucaucgACAGGAGCCGccauggCCAGGu -3'
miRNA:   3'- -GCGAGUcua---UGUCCUUGGCa-----GGUUCu -5'
23155 5' -51.2 NC_005178.1 + 33921 0.66 0.821764
Target:  5'- uGCUCGGcgGCcGGuGCCGgcuuUCCGGGGc -3'
miRNA:   3'- gCGAGUCuaUGuCCuUGGC----AGGUUCU- -5'
23155 5' -51.2 NC_005178.1 + 9364 0.66 0.821764
Target:  5'- gCGCUCGcGGUG-AGGAACCGcagCAGGAa -3'
miRNA:   3'- -GCGAGU-CUAUgUCCUUGGCag-GUUCU- -5'
23155 5' -51.2 NC_005178.1 + 25305 0.66 0.811938
Target:  5'- uGCggacCAGGUcgAGGAACUGUCCGAc- -3'
miRNA:   3'- gCGa---GUCUAugUCCUUGGCAGGUUcu -5'
23155 5' -51.2 NC_005178.1 + 30745 0.66 0.811938
Target:  5'- gGCggCGGAUcggcaGCAGGGcaucACCGaCCAGGAu -3'
miRNA:   3'- gCGa-GUCUA-----UGUCCU----UGGCaGGUUCU- -5'
23155 5' -51.2 NC_005178.1 + 34533 0.67 0.770652
Target:  5'- aCGCUCGGccugGUcCAGGAAgCGcUCCAGGc -3'
miRNA:   3'- -GCGAGUC----UAuGUCCUUgGC-AGGUUCu -5'
23155 5' -51.2 NC_005178.1 + 19666 0.69 0.668596
Target:  5'- gCGCUggcguacCGGGUcCAGGAGCaCGUCCuGGAc -3'
miRNA:   3'- -GCGA-------GUCUAuGUCCUUG-GCAGGuUCU- -5'
23155 5' -51.2 NC_005178.1 + 28533 0.7 0.611687
Target:  5'- gCGCUaCAuGAcuggGCGGGGGCCGUCCGc-- -3'
miRNA:   3'- -GCGA-GU-CUa---UGUCCUUGGCAGGUucu -5'
23155 5' -51.2 NC_005178.1 + 445 0.71 0.554096
Target:  5'- uCGCUgAGAUACuGGAGggGUCCAAGc -3'
miRNA:   3'- -GCGAgUCUAUGuCCUUggCAGGUUCu -5'
23155 5' -51.2 NC_005178.1 + 6665 0.73 0.434727
Target:  5'- cCGCUgCA-AUGCAGGAACgCGUUCAGGGg -3'
miRNA:   3'- -GCGA-GUcUAUGUCCUUG-GCAGGUUCU- -5'
23155 5' -51.2 NC_005178.1 + 28624 1.1 0.001361
Target:  5'- cCGCUCAGAUACAGGAACCGUCCAAGAa -3'
miRNA:   3'- -GCGAGUCUAUGUCCUUGGCAGGUUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.