Results 1 - 13 of 13 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23155 | 5' | -51.2 | NC_005178.1 | + | 22479 | 0.66 | 0.849862 |
Target: 5'- aGCUCGGugcGCAGGAAC--UCCuGGAa -3' miRNA: 3'- gCGAGUCua-UGUCCUUGgcAGGuUCU- -5' |
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23155 | 5' | -51.2 | NC_005178.1 | + | 10162 | 0.66 | 0.840737 |
Target: 5'- gCGCUUAucaucgACAGGAGCCGccauggCCAGGu -3' miRNA: 3'- -GCGAGUcua---UGUCCUUGGCa-----GGUUCu -5' |
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23155 | 5' | -51.2 | NC_005178.1 | + | 13188 | 0.66 | 0.840737 |
Target: 5'- uCGCcgAGGUGCuGGAGCCGUuUgGAGAa -3' miRNA: 3'- -GCGagUCUAUGuCCUUGGCA-GgUUCU- -5' |
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23155 | 5' | -51.2 | NC_005178.1 | + | 9364 | 0.66 | 0.821764 |
Target: 5'- gCGCUCGcGGUG-AGGAACCGcagCAGGAa -3' miRNA: 3'- -GCGAGU-CUAUgUCCUUGGCag-GUUCU- -5' |
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23155 | 5' | -51.2 | NC_005178.1 | + | 33921 | 0.66 | 0.821764 |
Target: 5'- uGCUCGGcgGCcGGuGCCGgcuuUCCGGGGc -3' miRNA: 3'- gCGAGUCuaUGuCCuUGGC----AGGUUCU- -5' |
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23155 | 5' | -51.2 | NC_005178.1 | + | 25305 | 0.66 | 0.811938 |
Target: 5'- uGCggacCAGGUcgAGGAACUGUCCGAc- -3' miRNA: 3'- gCGa---GUCUAugUCCUUGGCAGGUUcu -5' |
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23155 | 5' | -51.2 | NC_005178.1 | + | 30745 | 0.66 | 0.811938 |
Target: 5'- gGCggCGGAUcggcaGCAGGGcaucACCGaCCAGGAu -3' miRNA: 3'- gCGa-GUCUA-----UGUCCU----UGGCaGGUUCU- -5' |
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23155 | 5' | -51.2 | NC_005178.1 | + | 34533 | 0.67 | 0.770652 |
Target: 5'- aCGCUCGGccugGUcCAGGAAgCGcUCCAGGc -3' miRNA: 3'- -GCGAGUC----UAuGUCCUUgGC-AGGUUCu -5' |
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23155 | 5' | -51.2 | NC_005178.1 | + | 19666 | 0.69 | 0.668596 |
Target: 5'- gCGCUggcguacCGGGUcCAGGAGCaCGUCCuGGAc -3' miRNA: 3'- -GCGA-------GUCUAuGUCCUUG-GCAGGuUCU- -5' |
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23155 | 5' | -51.2 | NC_005178.1 | + | 28533 | 0.7 | 0.611687 |
Target: 5'- gCGCUaCAuGAcuggGCGGGGGCCGUCCGc-- -3' miRNA: 3'- -GCGA-GU-CUa---UGUCCUUGGCAGGUucu -5' |
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23155 | 5' | -51.2 | NC_005178.1 | + | 445 | 0.71 | 0.554096 |
Target: 5'- uCGCUgAGAUACuGGAGggGUCCAAGc -3' miRNA: 3'- -GCGAgUCUAUGuCCUUggCAGGUUCu -5' |
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23155 | 5' | -51.2 | NC_005178.1 | + | 6665 | 0.73 | 0.434727 |
Target: 5'- cCGCUgCA-AUGCAGGAACgCGUUCAGGGg -3' miRNA: 3'- -GCGA-GUcUAUGUCCUUG-GCAGGUUCU- -5' |
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23155 | 5' | -51.2 | NC_005178.1 | + | 28624 | 1.1 | 0.001361 |
Target: 5'- cCGCUCAGAUACAGGAACCGUCCAAGAa -3' miRNA: 3'- -GCGAGUCUAUGUCCUUGGCAGGUUCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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