miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23156 5' -56.9 NC_005178.1 + 32316 0.66 0.474276
Target:  5'- -aUAGAGC-ACGucaccgauaGCGAgggcgucgcaacUGCCGCCCUGa -3'
miRNA:   3'- aaGUCUCGaUGC---------CGCU------------AUGGCGGGAC- -5'
23156 5' -56.9 NC_005178.1 + 20844 0.67 0.423608
Target:  5'- -cCAGGGCgccggcucagUugGGCGAUgccugcGCCGgCCUGa -3'
miRNA:   3'- aaGUCUCG----------AugCCGCUA------UGGCgGGAC- -5'
23156 5' -56.9 NC_005178.1 + 26450 0.67 0.413868
Target:  5'- uUUCAGcAGC-GCGGCGcUGCCGgCCg- -3'
miRNA:   3'- -AAGUC-UCGaUGCCGCuAUGGCgGGac -5'
23156 5' -56.9 NC_005178.1 + 25618 0.67 0.404267
Target:  5'- -gCGGccgaGGCUGCGGCGAaagccACCGCCgaGu -3'
miRNA:   3'- aaGUC----UCGAUGCCGCUa----UGGCGGgaC- -5'
23156 5' -56.9 NC_005178.1 + 2890 0.67 0.394807
Target:  5'- gUUCAG-GCUacgggcGCGGCGGUcgaACaCGCCCUu -3'
miRNA:   3'- -AAGUCuCGA------UGCCGCUA---UG-GCGGGAc -5'
23156 5' -56.9 NC_005178.1 + 12128 0.68 0.376324
Target:  5'- -gCAGGGagGCGGCGAccAUCGCCUUGa -3'
miRNA:   3'- aaGUCUCgaUGCCGCUa-UGGCGGGAC- -5'
23156 5' -56.9 NC_005178.1 + 36336 0.68 0.366409
Target:  5'- -aCAGGGCUcagguccagcgcgGCGGCGAgUGCaCGCUCUa -3'
miRNA:   3'- aaGUCUCGA-------------UGCCGCU-AUG-GCGGGAc -5'
23156 5' -56.9 NC_005178.1 + 36556 0.69 0.332731
Target:  5'- -----cGCUACGGgGuggaguucuAUACCGCCCUGg -3'
miRNA:   3'- aagucuCGAUGCCgC---------UAUGGCGGGAC- -5'
23156 5' -56.9 NC_005178.1 + 16373 0.69 0.32447
Target:  5'- gUCGG-GCgGCGGCGccuaCGCCCUGg -3'
miRNA:   3'- aAGUCuCGaUGCCGCuaugGCGGGAC- -5'
23156 5' -56.9 NC_005178.1 + 4286 0.69 0.316362
Target:  5'- ---cGAGCgugACGGCGGguaUGCCCUGg -3'
miRNA:   3'- aaguCUCGa--UGCCGCUaugGCGGGAC- -5'
23156 5' -56.9 NC_005178.1 + 16534 0.69 0.29296
Target:  5'- gUCAG-GCcggugGCGGUGcUGCCGCCCa- -3'
miRNA:   3'- aAGUCuCGa----UGCCGCuAUGGCGGGac -5'
23156 5' -56.9 NC_005178.1 + 21177 0.71 0.250257
Target:  5'- -cCAGGGCguaGGCGccGCCGCCCg- -3'
miRNA:   3'- aaGUCUCGaugCCGCuaUGGCGGGac -5'
23156 5' -56.9 NC_005178.1 + 20360 0.71 0.230901
Target:  5'- -gCAGAGgccaUUGCGGCccugACCGCCCUGa -3'
miRNA:   3'- aaGUCUC----GAUGCCGcua-UGGCGGGAC- -5'
23156 5' -56.9 NC_005178.1 + 5014 0.73 0.178798
Target:  5'- -cCGGAGCagauaauuccguuguCGGUGAUGCCGCCCg- -3'
miRNA:   3'- aaGUCUCGau-------------GCCGCUAUGGCGGGac -5'
23156 5' -56.9 NC_005178.1 + 5973 0.76 0.10165
Target:  5'- -cCAG-GCcgGCGGCGGUACUGCCUUGa -3'
miRNA:   3'- aaGUCuCGa-UGCCGCUAUGGCGGGAC- -5'
23156 5' -56.9 NC_005178.1 + 29024 1.07 0.000497
Target:  5'- aUUCAGAGCUACGGCGAUACCGCCCUGg -3'
miRNA:   3'- -AAGUCUCGAUGCCGCUAUGGCGGGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.