miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23157 3' -48.4 NC_005178.1 + 29222 1.1 0.002995
Target:  5'- gUCGUCAAAGUCAGCACGAUCUACGAGu -3'
miRNA:   3'- -AGCAGUUUCAGUCGUGCUAGAUGCUC- -5'
23157 3' -48.4 NC_005178.1 + 3180 0.72 0.683023
Target:  5'- cUCGUCGAAcagCGGCA-GGUCUGCGAc -3'
miRNA:   3'- -AGCAGUUUca-GUCGUgCUAGAUGCUc -5'
23157 3' -48.4 NC_005178.1 + 4083 0.72 0.694702
Target:  5'- -gGUCcAGGUCGGCACGGUgUGCa-- -3'
miRNA:   3'- agCAGuUUCAGUCGUGCUAgAUGcuc -5'
23157 3' -48.4 NC_005178.1 + 28546 0.7 0.762814
Target:  5'- aCGgcgCGGAGUCGGCuauCGAcgUCUACGGc -3'
miRNA:   3'- aGCa--GUUUCAGUCGu--GCU--AGAUGCUc -5'
23157 3' -48.4 NC_005178.1 + 33298 0.68 0.862559
Target:  5'- cUCGUCGAGGUgAGCcaggGCGcgCUucucGCGGGc -3'
miRNA:   3'- -AGCAGUUUCAgUCG----UGCuaGA----UGCUC- -5'
23157 3' -48.4 NC_005178.1 + 30547 0.68 0.871189
Target:  5'- aUCGUCGAGGgcgaCGGguaGCGGUUgGCGAGg -3'
miRNA:   3'- -AGCAGUUUCa---GUCg--UGCUAGaUGCUC- -5'
23157 3' -48.4 NC_005178.1 + 14245 0.67 0.902769
Target:  5'- gCGUCuggcAAGUCGGCACcAUCguuacgGCGAa -3'
miRNA:   3'- aGCAGu---UUCAGUCGUGcUAGa-----UGCUc -5'
23157 3' -48.4 NC_005178.1 + 18985 0.67 0.902769
Target:  5'- -gGUCAcGGUCGGCGCGggUUGugauCGAGc -3'
miRNA:   3'- agCAGUuUCAGUCGUGCuaGAU----GCUC- -5'
23157 3' -48.4 NC_005178.1 + 13896 0.67 0.923209
Target:  5'- gCGUgAAcgGGcCAGCGCGGaCUAUGAGu -3'
miRNA:   3'- aGCAgUU--UCaGUCGUGCUaGAUGCUC- -5'
23157 3' -48.4 NC_005178.1 + 23206 0.66 0.935244
Target:  5'- gUCGUCGccgaccaccAGGUCAGgACGGU--GCGGGc -3'
miRNA:   3'- -AGCAGU---------UUCAGUCgUGCUAgaUGCUC- -5'
23157 3' -48.4 NC_005178.1 + 3216 0.66 0.940784
Target:  5'- gCG-CAAGGUCGGCaACGucagCcGCGAGg -3'
miRNA:   3'- aGCaGUUUCAGUCG-UGCua--GaUGCUC- -5'
23157 3' -48.4 NC_005178.1 + 20197 0.66 0.940784
Target:  5'- aUCGUUuccAGcCGGCGCGggCUGcCGAGc -3'
miRNA:   3'- -AGCAGuu-UCaGUCGUGCuaGAU-GCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.