Results 1 - 16 of 16 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23157 | 5' | -56.6 | NC_005178.1 | + | 15267 | 0.66 | 0.528494 |
Target: 5'- uGCUGGgCUUCAUcgCCcGCCGCCUgg-Cg -3' miRNA: 3'- gCGGCC-GAAGUA--GGaCGGUGGAacaG- -5' |
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23157 | 5' | -56.6 | NC_005178.1 | + | 8842 | 0.66 | 0.496192 |
Target: 5'- uGCCGGCccacaugUCggCC-GCCAUCUgGUCg -3' miRNA: 3'- gCGGCCGa------AGuaGGaCGGUGGAaCAG- -5' |
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23157 | 5' | -56.6 | NC_005178.1 | + | 33450 | 0.67 | 0.464812 |
Target: 5'- uGCUGGCgUCGUggaugucguagcCCacgGCCACCUgGUCg -3' miRNA: 3'- gCGGCCGaAGUA------------GGa--CGGUGGAaCAG- -5' |
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23157 | 5' | -56.6 | NC_005178.1 | + | 14090 | 0.67 | 0.464812 |
Target: 5'- gGCCGGCUUCGcgCCgGgCGCCcUGg- -3' miRNA: 3'- gCGGCCGAAGUa-GGaCgGUGGaACag -5' |
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23157 | 5' | -56.6 | NC_005178.1 | + | 21122 | 0.67 | 0.454583 |
Target: 5'- aGCUGGCgggCAUCCgcaGCCAgUagGUCa -3' miRNA: 3'- gCGGCCGaa-GUAGGa--CGGUgGaaCAG- -5' |
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23157 | 5' | -56.6 | NC_005178.1 | + | 10759 | 0.67 | 0.444476 |
Target: 5'- -cCCGGCUggaaggCCUGCC-CCUUgGUCa -3' miRNA: 3'- gcGGCCGAagua--GGACGGuGGAA-CAG- -5' |
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23157 | 5' | -56.6 | NC_005178.1 | + | 36353 | 0.68 | 0.414935 |
Target: 5'- uCGCCGGCaUCAUCaauccgcugauuCUGCgcuuCACCggGUCg -3' miRNA: 3'- -GCGGCCGaAGUAG------------GACG----GUGGaaCAG- -5' |
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23157 | 5' | -56.6 | NC_005178.1 | + | 10655 | 0.68 | 0.414935 |
Target: 5'- gGCCGGCgUC-UCCgcGCCgACCcUGUCu -3' miRNA: 3'- gCGGCCGaAGuAGGa-CGG-UGGaACAG- -5' |
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23157 | 5' | -56.6 | NC_005178.1 | + | 27430 | 0.68 | 0.395923 |
Target: 5'- aGCUGGCUgUCGUCCaGCCACUc---- -3' miRNA: 3'- gCGGCCGA-AGUAGGaCGGUGGaacag -5' |
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23157 | 5' | -56.6 | NC_005178.1 | + | 17177 | 0.68 | 0.384789 |
Target: 5'- gGCCGGCUUCAgggcggucagggCCgcaaugGCCucuGCCUcgGUCg -3' miRNA: 3'- gCGGCCGAAGUa-----------GGa-----CGG---UGGAa-CAG- -5' |
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23157 | 5' | -56.6 | NC_005178.1 | + | 4766 | 0.69 | 0.333972 |
Target: 5'- cCGuCCGGCUUCGgcaaaUCCguuucgGCCGCCUggaUCg -3' miRNA: 3'- -GC-GGCCGAAGU-----AGGa-----CGGUGGAac-AG- -5' |
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23157 | 5' | -56.6 | NC_005178.1 | + | 9030 | 0.69 | 0.316825 |
Target: 5'- uGCCGGCUUCGaCCUggagcaaugccgcGCCGCgCUcgcgGUCa -3' miRNA: 3'- gCGGCCGAAGUaGGA-------------CGGUG-GAa---CAG- -5' |
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23157 | 5' | -56.6 | NC_005178.1 | + | 483 | 0.7 | 0.309682 |
Target: 5'- aCGCCaGCga-GUgCUGCCGCCUcGUCc -3' miRNA: 3'- -GCGGcCGaagUAgGACGGUGGAaCAG- -5' |
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23157 | 5' | -56.6 | NC_005178.1 | + | 773 | 0.7 | 0.309682 |
Target: 5'- uCGCCGGCUaUCAagcagCCUaGCCACCUc--- -3' miRNA: 3'- -GCGGCCGA-AGUa----GGA-CGGUGGAacag -5' |
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23157 | 5' | -56.6 | NC_005178.1 | + | 30616 | 0.7 | 0.30189 |
Target: 5'- uCGCCGGCuUUCGUCUggcugcugcggGCCACCUc--- -3' miRNA: 3'- -GCGGCCG-AAGUAGGa----------CGGUGGAacag -5' |
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23157 | 5' | -56.6 | NC_005178.1 | + | 29256 | 1.09 | 0.000427 |
Target: 5'- gCGCCGGCUUCAUCCUGCCACCUUGUCc -3' miRNA: 3'- -GCGGCCGAAGUAGGACGGUGGAACAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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