miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23157 5' -56.6 NC_005178.1 + 15267 0.66 0.528494
Target:  5'- uGCUGGgCUUCAUcgCCcGCCGCCUgg-Cg -3'
miRNA:   3'- gCGGCC-GAAGUA--GGaCGGUGGAacaG- -5'
23157 5' -56.6 NC_005178.1 + 8842 0.66 0.496192
Target:  5'- uGCCGGCccacaugUCggCC-GCCAUCUgGUCg -3'
miRNA:   3'- gCGGCCGa------AGuaGGaCGGUGGAaCAG- -5'
23157 5' -56.6 NC_005178.1 + 33450 0.67 0.464812
Target:  5'- uGCUGGCgUCGUggaugucguagcCCacgGCCACCUgGUCg -3'
miRNA:   3'- gCGGCCGaAGUA------------GGa--CGGUGGAaCAG- -5'
23157 5' -56.6 NC_005178.1 + 14090 0.67 0.464812
Target:  5'- gGCCGGCUUCGcgCCgGgCGCCcUGg- -3'
miRNA:   3'- gCGGCCGAAGUa-GGaCgGUGGaACag -5'
23157 5' -56.6 NC_005178.1 + 21122 0.67 0.454583
Target:  5'- aGCUGGCgggCAUCCgcaGCCAgUagGUCa -3'
miRNA:   3'- gCGGCCGaa-GUAGGa--CGGUgGaaCAG- -5'
23157 5' -56.6 NC_005178.1 + 10759 0.67 0.444476
Target:  5'- -cCCGGCUggaaggCCUGCC-CCUUgGUCa -3'
miRNA:   3'- gcGGCCGAagua--GGACGGuGGAA-CAG- -5'
23157 5' -56.6 NC_005178.1 + 36353 0.68 0.414935
Target:  5'- uCGCCGGCaUCAUCaauccgcugauuCUGCgcuuCACCggGUCg -3'
miRNA:   3'- -GCGGCCGaAGUAG------------GACG----GUGGaaCAG- -5'
23157 5' -56.6 NC_005178.1 + 10655 0.68 0.414935
Target:  5'- gGCCGGCgUC-UCCgcGCCgACCcUGUCu -3'
miRNA:   3'- gCGGCCGaAGuAGGa-CGG-UGGaACAG- -5'
23157 5' -56.6 NC_005178.1 + 27430 0.68 0.395923
Target:  5'- aGCUGGCUgUCGUCCaGCCACUc---- -3'
miRNA:   3'- gCGGCCGA-AGUAGGaCGGUGGaacag -5'
23157 5' -56.6 NC_005178.1 + 17177 0.68 0.384789
Target:  5'- gGCCGGCUUCAgggcggucagggCCgcaaugGCCucuGCCUcgGUCg -3'
miRNA:   3'- gCGGCCGAAGUa-----------GGa-----CGG---UGGAa-CAG- -5'
23157 5' -56.6 NC_005178.1 + 4766 0.69 0.333972
Target:  5'- cCGuCCGGCUUCGgcaaaUCCguuucgGCCGCCUggaUCg -3'
miRNA:   3'- -GC-GGCCGAAGU-----AGGa-----CGGUGGAac-AG- -5'
23157 5' -56.6 NC_005178.1 + 9030 0.69 0.316825
Target:  5'- uGCCGGCUUCGaCCUggagcaaugccgcGCCGCgCUcgcgGUCa -3'
miRNA:   3'- gCGGCCGAAGUaGGA-------------CGGUG-GAa---CAG- -5'
23157 5' -56.6 NC_005178.1 + 483 0.7 0.309682
Target:  5'- aCGCCaGCga-GUgCUGCCGCCUcGUCc -3'
miRNA:   3'- -GCGGcCGaagUAgGACGGUGGAaCAG- -5'
23157 5' -56.6 NC_005178.1 + 773 0.7 0.309682
Target:  5'- uCGCCGGCUaUCAagcagCCUaGCCACCUc--- -3'
miRNA:   3'- -GCGGCCGA-AGUa----GGA-CGGUGGAacag -5'
23157 5' -56.6 NC_005178.1 + 30616 0.7 0.30189
Target:  5'- uCGCCGGCuUUCGUCUggcugcugcggGCCACCUc--- -3'
miRNA:   3'- -GCGGCCG-AAGUAGGa----------CGGUGGAacag -5'
23157 5' -56.6 NC_005178.1 + 29256 1.09 0.000427
Target:  5'- gCGCCGGCUUCAUCCUGCCACCUUGUCc -3'
miRNA:   3'- -GCGGCCGAAGUAGGACGGUGGAACAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.