miRNA display CGI


Results 41 - 57 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23158 5' -56.1 NC_005178.1 + 27291 0.66 0.551058
Target:  5'- aCCAGCGUGG--CCGgCagGCCGAUgcgUCc -3'
miRNA:   3'- aGGUCGCGCCuuGGCgG--UGGCUAa--AG- -5'
23158 5' -56.1 NC_005178.1 + 16539 0.66 0.562102
Target:  5'- gCCGGUgGCGGuGCUGCCGCCc----- -3'
miRNA:   3'- aGGUCG-CGCCuUGGCGGUGGcuaaag -5'
23158 5' -56.1 NC_005178.1 + 28760 0.66 0.566536
Target:  5'- cCUGGUGCGGcucagcgguugcaaaGACCGCCGCCc----- -3'
miRNA:   3'- aGGUCGCGCC---------------UUGGCGGUGGcuaaag -5'
23158 5' -56.1 NC_005178.1 + 29698 0.66 0.573203
Target:  5'- aCgGGgGaCGGAugCGCCACUGGa--- -3'
miRNA:   3'- aGgUCgC-GCCUugGCGGUGGCUaaag -5'
23158 5' -56.1 NC_005178.1 + 22922 0.68 0.406444
Target:  5'- cUCCAGCGCGGcGACCccuucGUCGuCCGAg--- -3'
miRNA:   3'- -AGGUCGCGCC-UUGG-----CGGU-GGCUaaag -5'
23158 5' -56.1 NC_005178.1 + 29285 0.68 0.406444
Target:  5'- cUCCAGUGCGuccCCGCCcUCGGUUUg -3'
miRNA:   3'- -AGGUCGCGCcuuGGCGGuGGCUAAAg -5'
23158 5' -56.1 NC_005178.1 + 14325 0.69 0.387762
Target:  5'- cUCGGCGCGGAugCGCUcgACCa----- -3'
miRNA:   3'- aGGUCGCGCCUugGCGG--UGGcuaaag -5'
23158 5' -56.1 NC_005178.1 + 25123 0.69 0.386842
Target:  5'- -gCGGCGgcauCGGGguugucaucagucACCGCCACCGGggUCg -3'
miRNA:   3'- agGUCGC----GCCU-------------UGGCGGUGGCUaaAG- -5'
23158 5' -56.1 NC_005178.1 + 31806 0.69 0.360818
Target:  5'- gUCguGCcCGaGGCCGCCACCGAUg-- -3'
miRNA:   3'- -AGguCGcGCcUUGGCGGUGGCUAaag -5'
23158 5' -56.1 NC_005178.1 + 20207 0.69 0.360818
Target:  5'- gCCGGCGCGG-GCUGCCgaGCUGGg--- -3'
miRNA:   3'- aGGUCGCGCCuUGGCGG--UGGCUaaag -5'
23158 5' -56.1 NC_005178.1 + 15059 0.7 0.352131
Target:  5'- gUCCGaCGCGGAcggcucACCcucGCCGCCGAcgUCg -3'
miRNA:   3'- -AGGUcGCGCCU------UGG---CGGUGGCUaaAG- -5'
23158 5' -56.1 NC_005178.1 + 13005 0.7 0.352131
Target:  5'- gUCCAGCa-GGAuuCCGCCGCUGAUc-- -3'
miRNA:   3'- -AGGUCGcgCCUu-GGCGGUGGCUAaag -5'
23158 5' -56.1 NC_005178.1 + 24901 0.7 0.32697
Target:  5'- gCCAGCGCGc--CgGCCGCCGAg--- -3'
miRNA:   3'- aGGUCGCGCcuuGgCGGUGGCUaaag -5'
23158 5' -56.1 NC_005178.1 + 28546 0.71 0.303166
Target:  5'- -aCGGCGCGGAGuCgGCUAUCGAcgUCu -3'
miRNA:   3'- agGUCGCGCCUU-GgCGGUGGCUaaAG- -5'
23158 5' -56.1 NC_005178.1 + 26901 0.71 0.273534
Target:  5'- gUCGGCGCGGAGaCGCCgGCCGGg--- -3'
miRNA:   3'- aGGUCGCGCCUUgGCGG-UGGCUaaag -5'
23158 5' -56.1 NC_005178.1 + 13035 0.73 0.22733
Target:  5'- aCCGGCGaCGGuguuGCCGUCGCUGAUc-- -3'
miRNA:   3'- aGGUCGC-GCCu---UGGCGGUGGCUAaag -5'
23158 5' -56.1 NC_005178.1 + 26455 0.73 0.198513
Target:  5'- -gCAGCGCGGcGCUGCCgGCCGAg--- -3'
miRNA:   3'- agGUCGCGCCuUGGCGG-UGGCUaaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.