Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23159 | 3' | -54 | NC_005178.1 | + | 4057 | 0.66 | 0.669821 |
Target: 5'- uCGCCcgcGAGCUGGaggaauuccacggcgACCAGGuggccgugggcuacgACAUCCa -3' miRNA: 3'- -GCGGaacCUCGACU---------------UGGUCC---------------UGUAGG- -5' |
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23159 | 3' | -54 | NC_005178.1 | + | 15041 | 0.68 | 0.558448 |
Target: 5'- uGCCUggugUGGGGCguUGAGgcgguccaguuCCAGGAguUCCu -3' miRNA: 3'- gCGGA----ACCUCG--ACUU-----------GGUCCUguAGG- -5' |
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23159 | 3' | -54 | NC_005178.1 | + | 26776 | 0.68 | 0.569684 |
Target: 5'- aCGCC-UGGAGCaacuGACCaaGGGGCAggccuUCCa -3' miRNA: 3'- -GCGGaACCUCGac--UUGG--UCCUGU-----AGG- -5' |
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23159 | 3' | -54 | NC_005178.1 | + | 6476 | 0.67 | 0.592309 |
Target: 5'- uGCC--GGAGCUGGugagccaguucgGCCAGGucACcgCCg -3' miRNA: 3'- gCGGaaCCUCGACU------------UGGUCC--UGuaGG- -5' |
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23159 | 3' | -54 | NC_005178.1 | + | 14641 | 0.67 | 0.603681 |
Target: 5'- uCGCCgcgcUGGAGUUcuACCAGGAgCGcgCCg -3' miRNA: 3'- -GCGGa---ACCUCGAcuUGGUCCU-GUa-GG- -5' |
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23159 | 3' | -54 | NC_005178.1 | + | 33871 | 0.67 | 0.615079 |
Target: 5'- uGuCCUguucGGuGaagaGGACCAGGGCGUCCu -3' miRNA: 3'- gC-GGAa---CCuCga--CUUGGUCCUGUAGG- -5' |
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23159 | 3' | -54 | NC_005178.1 | + | 8488 | 0.67 | 0.637912 |
Target: 5'- aCGCCUcUGGAGCUGggUUcaAGuACA-CCg -3' miRNA: 3'- -GCGGA-ACCUCGACuuGG--UCcUGUaGG- -5' |
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23159 | 3' | -54 | NC_005178.1 | + | 12154 | 0.67 | 0.642479 |
Target: 5'- gCGCCUaccgcgacguccUGGAGCagucggcggcacaacUGAAgacgguCCAGGACA-CCa -3' miRNA: 3'- -GCGGA------------ACCUCG---------------ACUU------GGUCCUGUaGG- -5' |
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23159 | 3' | -54 | NC_005178.1 | + | 4932 | 0.66 | 0.660723 |
Target: 5'- uCGCCgaGGAaCUGGccGCCAGcGGCcgCCc -3' miRNA: 3'- -GCGGaaCCUcGACU--UGGUC-CUGuaGG- -5' |
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23159 | 3' | -54 | NC_005178.1 | + | 8157 | 0.68 | 0.547277 |
Target: 5'- uCGCCcgUGGGGac-GACCAGGuCGUUCg -3' miRNA: 3'- -GCGGa-ACCUCgacUUGGUCCuGUAGG- -5' |
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23159 | 3' | -54 | NC_005178.1 | + | 3010 | 0.68 | 0.547277 |
Target: 5'- aGCCU-GGAGCgcuuccUGGACCAGGcCGagCg -3' miRNA: 3'- gCGGAaCCUCG------ACUUGGUCCuGUagG- -5' |
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23159 | 3' | -54 | NC_005178.1 | + | 32460 | 0.68 | 0.536177 |
Target: 5'- cCGC--UGGAGCUacaacagcagcGACCGGGACAUCa -3' miRNA: 3'- -GCGgaACCUCGAc----------UUGGUCCUGUAGg -5' |
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23159 | 3' | -54 | NC_005178.1 | + | 6696 | 0.77 | 0.165419 |
Target: 5'- gCGCC-UGGAccgggcggccucacuGCUGAGCCAGGAgGUgCCg -3' miRNA: 3'- -GCGGaACCU---------------CGACUUGGUCCUgUA-GG- -5' |
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23159 | 3' | -54 | NC_005178.1 | + | 17184 | 0.76 | 0.178009 |
Target: 5'- aCGCC-UGGAugUGcuCCAGGACAUCCg -3' miRNA: 3'- -GCGGaACCUcgACuuGGUCCUGUAGG- -5' |
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23159 | 3' | -54 | NC_005178.1 | + | 28297 | 0.72 | 0.355561 |
Target: 5'- gCGCUgcgGGAGCU--GCCGGGGCcgCUg -3' miRNA: 3'- -GCGGaa-CCUCGAcuUGGUCCUGuaGG- -5' |
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23159 | 3' | -54 | NC_005178.1 | + | 27074 | 0.71 | 0.391929 |
Target: 5'- aGCUcaacagGGAGCUGGACCGGaGCAUUg -3' miRNA: 3'- gCGGaa----CCUCGACUUGGUCcUGUAGg -5' |
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23159 | 3' | -54 | NC_005178.1 | + | 11784 | 0.7 | 0.460055 |
Target: 5'- cCGCCgcaGGccGGCcugcacaUGGACCAGGACAcCCu -3' miRNA: 3'- -GCGGaa-CC--UCG-------ACUUGGUCCUGUaGG- -5' |
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23159 | 3' | -54 | NC_005178.1 | + | 5328 | 0.69 | 0.471492 |
Target: 5'- gCGCCUgaaccUGGAGCUGuacACCGGuGCggCCc -3' miRNA: 3'- -GCGGA-----ACCUCGACu--UGGUCcUGuaGG- -5' |
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23159 | 3' | -54 | NC_005178.1 | + | 15549 | 0.69 | 0.492644 |
Target: 5'- gGCCaaGGGGCUGAccccaGCCAagcuGGcucACAUCCu -3' miRNA: 3'- gCGGaaCCUCGACU-----UGGU----CC---UGUAGG- -5' |
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23159 | 3' | -54 | NC_005178.1 | + | 34577 | 0.68 | 0.525156 |
Target: 5'- uGCCUaccggGGAGCUG-GCCGGGcgaGUCg -3' miRNA: 3'- gCGGAa----CCUCGACuUGGUCCug-UAGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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