miRNA display CGI


Results 21 - 40 of 41 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23159 3' -54 NC_005178.1 + 34193 0.68 0.558448
Target:  5'- gGCCgugcaucgGGuGCUGGACCucGGCGUCg -3'
miRNA:   3'- gCGGaa------CCuCGACUUGGucCUGUAGg -5'
23159 3' -54 NC_005178.1 + 3010 0.68 0.547277
Target:  5'- aGCCU-GGAGCgcuuccUGGACCAGGcCGagCg -3'
miRNA:   3'- gCGGAaCCUCG------ACUUGGUCCuGUagG- -5'
23159 3' -54 NC_005178.1 + 13526 0.68 0.547277
Target:  5'- uGCCgauagGGaAGCUGcguACCAGGGCuuUCUg -3'
miRNA:   3'- gCGGaa---CC-UCGACu--UGGUCCUGu-AGG- -5'
23159 3' -54 NC_005178.1 + 8899 0.68 0.547277
Target:  5'- cCGCgUUGGAGaCUGAugCGcugaaguucuuGGACGguUCCu -3'
miRNA:   3'- -GCGgAACCUC-GACUugGU-----------CCUGU--AGG- -5'
23159 3' -54 NC_005178.1 + 8157 0.68 0.547277
Target:  5'- uCGCCcgUGGGGac-GACCAGGuCGUUCg -3'
miRNA:   3'- -GCGGa-ACCUCgacUUGGUCCuGUAGG- -5'
23159 3' -54 NC_005178.1 + 32460 0.68 0.536177
Target:  5'- cCGC--UGGAGCUacaacagcagcGACCGGGACAUCa -3'
miRNA:   3'- -GCGgaACCUCGAc----------UUGGUCCUGUAGg -5'
23159 3' -54 NC_005178.1 + 34577 0.68 0.525156
Target:  5'- uGCCUaccggGGAGCUG-GCCGGGcgaGUCg -3'
miRNA:   3'- gCGGAa----CCUCGACuUGGUCCug-UAGg -5'
23159 3' -54 NC_005178.1 + 32382 0.69 0.514223
Target:  5'- aGCCacuccGGGGCUGuaGACCGgcgccagguugcGGGCGUCCu -3'
miRNA:   3'- gCGGaa---CCUCGAC--UUGGU------------CCUGUAGG- -5'
23159 3' -54 NC_005178.1 + 15549 0.69 0.492644
Target:  5'- gGCCaaGGGGCUGAccccaGCCAagcuGGcucACAUCCu -3'
miRNA:   3'- gCGGaaCCUCGACU-----UGGU----CC---UGUAGG- -5'
23159 3' -54 NC_005178.1 + 15920 0.69 0.482012
Target:  5'- uCGUCcgGGAGCUGAGCCGccgaguaaccGGcCAUCUu -3'
miRNA:   3'- -GCGGaaCCUCGACUUGGU----------CCuGUAGG- -5'
23159 3' -54 NC_005178.1 + 5950 0.69 0.482012
Target:  5'- gGCCUggacGGGGC-GGACCAGGucCAggCCg -3'
miRNA:   3'- gCGGAa---CCUCGaCUUGGUCCu-GUa-GG- -5'
23159 3' -54 NC_005178.1 + 5328 0.69 0.471492
Target:  5'- gCGCCUgaaccUGGAGCUGuacACCGGuGCggCCc -3'
miRNA:   3'- -GCGGA-----ACCUCGACu--UGGUCcUGuaGG- -5'
23159 3' -54 NC_005178.1 + 11784 0.7 0.460055
Target:  5'- cCGCCgcaGGccGGCcugcacaUGGACCAGGACAcCCu -3'
miRNA:   3'- -GCGGaa-CC--UCG-------ACUUGGUCCUGUaGG- -5'
23159 3' -54 NC_005178.1 + 17141 0.7 0.440656
Target:  5'- gCGCagCUUGGccaGGUUGGucGCCuGGGCGUCCa -3'
miRNA:   3'- -GCG--GAACC---UCGACU--UGGuCCUGUAGG- -5'
23159 3' -54 NC_005178.1 + 23526 0.7 0.420747
Target:  5'- gCGCCgcaaUGGcuucguGCUGGccguCCGGGugGUCCa -3'
miRNA:   3'- -GCGGa---ACCu-----CGACUu---GGUCCugUAGG- -5'
23159 3' -54 NC_005178.1 + 27074 0.71 0.391929
Target:  5'- aGCUcaacagGGAGCUGGACCGGaGCAUUg -3'
miRNA:   3'- gCGGaa----CCUCGACUUGGUCcUGUAGg -5'
23159 3' -54 NC_005178.1 + 28297 0.72 0.355561
Target:  5'- gCGCUgcgGGAGCU--GCCGGGGCcgCUg -3'
miRNA:   3'- -GCGGaa-CCUCGAcuUGGUCCUGuaGG- -5'
23159 3' -54 NC_005178.1 + 19549 0.75 0.210344
Target:  5'- aGCC-UGGAGCUGGGCacccuGGGCAgCCg -3'
miRNA:   3'- gCGGaACCUCGACUUGgu---CCUGUaGG- -5'
23159 3' -54 NC_005178.1 + 17184 0.76 0.178009
Target:  5'- aCGCC-UGGAugUGcuCCAGGACAUCCg -3'
miRNA:   3'- -GCGGaACCUcgACuuGGUCCUGUAGG- -5'
23159 3' -54 NC_005178.1 + 6696 0.77 0.165419
Target:  5'- gCGCC-UGGAccgggcggccucacuGCUGAGCCAGGAgGUgCCg -3'
miRNA:   3'- -GCGGaACCU---------------CGACUUGGUCCUgUA-GG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.