miRNA display CGI


Results 21 - 40 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23159 5' -63.7 NC_005178.1 + 32284 0.68 0.199228
Target:  5'- aCGGUgGCGGCCUCGGCCaacuGCUccaGGu -3'
miRNA:   3'- cGCCAgCGCCGGAGCUGGacc-CGG---CC- -5'
23159 5' -63.7 NC_005178.1 + 26824 0.68 0.189264
Target:  5'- uGUGGccagCGgGGCUgucuUCGGCCcguUGGGCUGGu -3'
miRNA:   3'- -CGCCa---GCgCCGG----AGCUGG---ACCCGGCC- -5'
23159 5' -63.7 NC_005178.1 + 1548 0.68 0.189264
Target:  5'- -aGuGUCGC--CCUCGGCCUGG-CCGGa -3'
miRNA:   3'- cgC-CAGCGccGGAGCUGGACCcGGCC- -5'
23159 5' -63.7 NC_005178.1 + 22591 0.68 0.184448
Target:  5'- uGCGGaUgGCGGCCUCGACCacGuCCaGGa -3'
miRNA:   3'- -CGCC-AgCGCCGGAGCUGGacCcGG-CC- -5'
23159 5' -63.7 NC_005178.1 + 18185 0.69 0.174685
Target:  5'- gGCGGUucggcugCGCGGUggCGuCUaUGGGCCGGg -3'
miRNA:   3'- -CGCCA-------GCGCCGgaGCuGG-ACCCGGCC- -5'
23159 5' -63.7 NC_005178.1 + 23522 0.69 0.170644
Target:  5'- cGCGG-CGCcgcaauGGCUUCGugCUGGccguCCGGg -3'
miRNA:   3'- -CGCCaGCG------CCGGAGCugGACCc---GGCC- -5'
23159 5' -63.7 NC_005178.1 + 14311 0.69 0.170644
Target:  5'- aGCGGaugCGCGGCCuUCGACac-GGCCc- -3'
miRNA:   3'- -CGCCa--GCGCCGG-AGCUGgacCCGGcc -5'
23159 5' -63.7 NC_005178.1 + 15881 0.69 0.170644
Target:  5'- aGUGGUUGCcgcaGGCCuUCGACCaccGGCCGc -3'
miRNA:   3'- -CGCCAGCG----CCGG-AGCUGGac-CCGGCc -5'
23159 5' -63.7 NC_005178.1 + 26713 0.69 0.167996
Target:  5'- cGgGGUgGCcaagGGCgccugggacgaaaugCUCGGCgUGGGCCGGa -3'
miRNA:   3'- -CgCCAgCG----CCG---------------GAGCUGgACCCGGCC- -5'
23159 5' -63.7 NC_005178.1 + 34854 0.69 0.161961
Target:  5'- cGCGG-CGCGGguuucCUUCGGCa-GGGCCGa -3'
miRNA:   3'- -CGCCaGCGCC-----GGAGCUGgaCCCGGCc -5'
23159 5' -63.7 NC_005178.1 + 14545 0.69 0.161961
Target:  5'- gGUGGUCGU--CCUUGACCUGGGUg-- -3'
miRNA:   3'- -CGCCAGCGccGGAGCUGGACCCGgcc -5'
23159 5' -63.7 NC_005178.1 + 28161 0.69 0.161961
Target:  5'- aCGGUCG-GcGCCUCGgcuguauccGCCUcGGCCGGc -3'
miRNA:   3'- cGCCAGCgC-CGGAGC---------UGGAcCCGGCC- -5'
23159 5' -63.7 NC_005178.1 + 34772 0.69 0.157771
Target:  5'- gGCGGU--UGGUUUCGACCaGGGCCa- -3'
miRNA:   3'- -CGCCAgcGCCGGAGCUGGaCCCGGcc -5'
23159 5' -63.7 NC_005178.1 + 32410 0.7 0.145782
Target:  5'- -aGGUUGCGGgcguCCUCcagaGACacuggCUGGGCCGGa -3'
miRNA:   3'- cgCCAGCGCC----GGAG----CUG-----GACCCGGCC- -5'
23159 5' -63.7 NC_005178.1 + 2141 0.7 0.138257
Target:  5'- uCGGUgGCGGCCagCG-CCgGGGCCa- -3'
miRNA:   3'- cGCCAgCGCCGGa-GCuGGaCCCGGcc -5'
23159 5' -63.7 NC_005178.1 + 20797 0.7 0.138257
Target:  5'- cGCGGUagCGUGGUCcaaUC-ACCUGGGCCa- -3'
miRNA:   3'- -CGCCA--GCGCCGG---AGcUGGACCCGGcc -5'
23159 5' -63.7 NC_005178.1 + 9022 0.7 0.127636
Target:  5'- cGCGccGUUGcCGGCUUCGACCUGGagcaauGCCGc -3'
miRNA:   3'- -CGC--CAGC-GCCGGAGCUGGACC------CGGCc -5'
23159 5' -63.7 NC_005178.1 + 31054 0.71 0.12098
Target:  5'- aCGGUgGCGGCggUGACCU-GGCCGa -3'
miRNA:   3'- cGCCAgCGCCGgaGCUGGAcCCGGCc -5'
23159 5' -63.7 NC_005178.1 + 30476 0.71 0.1116
Target:  5'- -aGGUCaCcGCCUCGcCCaGGGCCGGg -3'
miRNA:   3'- cgCCAGcGcCGGAGCuGGaCCCGGCC- -5'
23159 5' -63.7 NC_005178.1 + 20715 0.71 0.1116
Target:  5'- aGCGG-CGCgaccaggcuaucGGCCUgGuuuugcauguCCUGGGCCGGc -3'
miRNA:   3'- -CGCCaGCG------------CCGGAgCu---------GGACCCGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.