miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23160 3' -56.4 NC_005178.1 + 4269 0.66 0.516901
Target:  5'- cUCGAcgagauucGCGCC-GAGCGUgaCGGCGGGUa -3'
miRNA:   3'- -AGCU--------CGCGGaCUCGCGgaGCUGUUUA- -5'
23160 3' -56.4 NC_005178.1 + 24587 0.66 0.506092
Target:  5'- cCG-GCGaCCUGGGcCGCUUCGGCc--- -3'
miRNA:   3'- aGCuCGC-GGACUC-GCGGAGCUGuuua -5'
23160 3' -56.4 NC_005178.1 + 33894 0.67 0.463894
Target:  5'- -aGGGCGuCCUGccGCGCCUggCGGCGAu- -3'
miRNA:   3'- agCUCGC-GGACu-CGCGGA--GCUGUUua -5'
23160 3' -56.4 NC_005178.1 + 3076 0.67 0.432491
Target:  5'- aUGAGCGUucccgaCUGGGCGCCUgccuucaUGACGAu- -3'
miRNA:   3'- aGCUCGCG------GACUCGCGGA-------GCUGUUua -5'
23160 3' -56.4 NC_005178.1 + 20213 0.68 0.404267
Target:  5'- gCGGGCuGCCgagcUGGGCGaCCUCGGCc--- -3'
miRNA:   3'- aGCUCG-CGG----ACUCGC-GGAGCUGuuua -5'
23160 3' -56.4 NC_005178.1 + 5526 0.68 0.385492
Target:  5'- gUCGAGaaguauguCGCCUGccuGCGCCUgGGCGGc- -3'
miRNA:   3'- -AGCUC--------GCGGACu--CGCGGAgCUGUUua -5'
23160 3' -56.4 NC_005178.1 + 26724 0.68 0.376324
Target:  5'- -aGGGCGCCUGGGaCGaaaugCUCGGCGu-- -3'
miRNA:   3'- agCUCGCGGACUC-GCg----GAGCUGUuua -5'
23160 3' -56.4 NC_005178.1 + 9346 0.7 0.300607
Target:  5'- aCGAGUGCCUGgcacGGCGCgCUCG-CGGu- -3'
miRNA:   3'- aGCUCGCGGAC----UCGCG-GAGCuGUUua -5'
23160 3' -56.4 NC_005178.1 + 12591 0.7 0.285466
Target:  5'- aCGGcCGCCUgGAGCGCUUCGAgGAc- -3'
miRNA:   3'- aGCUcGCGGA-CUCGCGGAGCUgUUua -5'
23160 3' -56.4 NC_005178.1 + 37259 0.72 0.224735
Target:  5'- --aAGCGCCUGcaaaGGCGCUUUGACGGGUc -3'
miRNA:   3'- agcUCGCGGAC----UCGCGGAGCUGUUUA- -5'
23160 3' -56.4 NC_005178.1 + 22721 0.73 0.190622
Target:  5'- cCGAGUGCCauAGCGCCaUCGACGu-- -3'
miRNA:   3'- aGCUCGCGGacUCGCGG-AGCUGUuua -5'
23160 3' -56.4 NC_005178.1 + 7062 0.73 0.175331
Target:  5'- gCGAGCGCugCUGAGCGCCgaaCGcAUAGAUg -3'
miRNA:   3'- aGCUCGCG--GACUCGCGGa--GC-UGUUUA- -5'
23160 3' -56.4 NC_005178.1 + 17851 0.74 0.152265
Target:  5'- -gGAGCGCCUGccGC-CCUCGGCGAGg -3'
miRNA:   3'- agCUCGCGGACu-CGcGGAGCUGUUUa -5'
23160 3' -56.4 NC_005178.1 + 31252 1.07 0.000598
Target:  5'- gUCGAGCGCCUGAGCGCCUCGACAAAUa -3'
miRNA:   3'- -AGCUCGCGGACUCGCGGAGCUGUUUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.