Results 1 - 14 of 14 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23160 | 3' | -56.4 | NC_005178.1 | + | 4269 | 0.66 | 0.516901 |
Target: 5'- cUCGAcgagauucGCGCC-GAGCGUgaCGGCGGGUa -3' miRNA: 3'- -AGCU--------CGCGGaCUCGCGgaGCUGUUUA- -5' |
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23160 | 3' | -56.4 | NC_005178.1 | + | 24587 | 0.66 | 0.506092 |
Target: 5'- cCG-GCGaCCUGGGcCGCUUCGGCc--- -3' miRNA: 3'- aGCuCGC-GGACUC-GCGGAGCUGuuua -5' |
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23160 | 3' | -56.4 | NC_005178.1 | + | 33894 | 0.67 | 0.463894 |
Target: 5'- -aGGGCGuCCUGccGCGCCUggCGGCGAu- -3' miRNA: 3'- agCUCGC-GGACu-CGCGGA--GCUGUUua -5' |
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23160 | 3' | -56.4 | NC_005178.1 | + | 3076 | 0.67 | 0.432491 |
Target: 5'- aUGAGCGUucccgaCUGGGCGCCUgccuucaUGACGAu- -3' miRNA: 3'- aGCUCGCG------GACUCGCGGA-------GCUGUUua -5' |
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23160 | 3' | -56.4 | NC_005178.1 | + | 20213 | 0.68 | 0.404267 |
Target: 5'- gCGGGCuGCCgagcUGGGCGaCCUCGGCc--- -3' miRNA: 3'- aGCUCG-CGG----ACUCGC-GGAGCUGuuua -5' |
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23160 | 3' | -56.4 | NC_005178.1 | + | 5526 | 0.68 | 0.385492 |
Target: 5'- gUCGAGaaguauguCGCCUGccuGCGCCUgGGCGGc- -3' miRNA: 3'- -AGCUC--------GCGGACu--CGCGGAgCUGUUua -5' |
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23160 | 3' | -56.4 | NC_005178.1 | + | 26724 | 0.68 | 0.376324 |
Target: 5'- -aGGGCGCCUGGGaCGaaaugCUCGGCGu-- -3' miRNA: 3'- agCUCGCGGACUC-GCg----GAGCUGUuua -5' |
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23160 | 3' | -56.4 | NC_005178.1 | + | 9346 | 0.7 | 0.300607 |
Target: 5'- aCGAGUGCCUGgcacGGCGCgCUCG-CGGu- -3' miRNA: 3'- aGCUCGCGGAC----UCGCG-GAGCuGUUua -5' |
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23160 | 3' | -56.4 | NC_005178.1 | + | 12591 | 0.7 | 0.285466 |
Target: 5'- aCGGcCGCCUgGAGCGCUUCGAgGAc- -3' miRNA: 3'- aGCUcGCGGA-CUCGCGGAGCUgUUua -5' |
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23160 | 3' | -56.4 | NC_005178.1 | + | 37259 | 0.72 | 0.224735 |
Target: 5'- --aAGCGCCUGcaaaGGCGCUUUGACGGGUc -3' miRNA: 3'- agcUCGCGGAC----UCGCGGAGCUGUUUA- -5' |
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23160 | 3' | -56.4 | NC_005178.1 | + | 22721 | 0.73 | 0.190622 |
Target: 5'- cCGAGUGCCauAGCGCCaUCGACGu-- -3' miRNA: 3'- aGCUCGCGGacUCGCGG-AGCUGUuua -5' |
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23160 | 3' | -56.4 | NC_005178.1 | + | 7062 | 0.73 | 0.175331 |
Target: 5'- gCGAGCGCugCUGAGCGCCgaaCGcAUAGAUg -3' miRNA: 3'- aGCUCGCG--GACUCGCGGa--GC-UGUUUA- -5' |
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23160 | 3' | -56.4 | NC_005178.1 | + | 17851 | 0.74 | 0.152265 |
Target: 5'- -gGAGCGCCUGccGC-CCUCGGCGAGg -3' miRNA: 3'- agCUCGCGGACu-CGcGGAGCUGUUUa -5' |
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23160 | 3' | -56.4 | NC_005178.1 | + | 31252 | 1.07 | 0.000598 |
Target: 5'- gUCGAGCGCCUGAGCGCCUCGACAAAUa -3' miRNA: 3'- -AGCUCGCGGACUCGCGGAGCUGUUUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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