miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23162 3' -53 NC_005178.1 + 22788 0.66 0.800073
Target:  5'- gCCGaccugGUCGAGCaGUACGGCGagGCGu -3'
miRNA:   3'- -GGCa----UAGCUCGaCAUGCUGCcgUGCc -5'
23162 3' -53 NC_005178.1 + 27654 0.66 0.769838
Target:  5'- aCGUGcCGccGCUGc-CGugGGCAUGGg -3'
miRNA:   3'- gGCAUaGCu-CGACauGCugCCGUGCC- -5'
23162 3' -53 NC_005178.1 + 4501 0.66 0.759448
Target:  5'- -aGUGgugCGAGCUGgcCGAgCGGCAacgcucCGGc -3'
miRNA:   3'- ggCAUa--GCUCGACauGCU-GCCGU------GCC- -5'
23162 3' -53 NC_005178.1 + 35106 0.67 0.748923
Target:  5'- gCCGc--CGAGCUGccGCuGGCGGC-CGGu -3'
miRNA:   3'- -GGCauaGCUCGACa-UG-CUGCCGuGCC- -5'
23162 3' -53 NC_005178.1 + 17614 0.67 0.738274
Target:  5'- aCCGUG-CGcGCUcgaucacUGCGGCGGCACuGGc -3'
miRNA:   3'- -GGCAUaGCuCGAc------AUGCUGCCGUG-CC- -5'
23162 3' -53 NC_005178.1 + 4071 0.67 0.716656
Target:  5'- gCCcUGUCGAGUgGUccaGGuCGGCACGGu -3'
miRNA:   3'- -GGcAUAGCUCGaCAug-CU-GCCGUGCC- -5'
23162 3' -53 NC_005178.1 + 25832 0.68 0.683606
Target:  5'- -gGUGUCGuuCUcGUugGACGGCGCc- -3'
miRNA:   3'- ggCAUAGCucGA-CAugCUGCCGUGcc -5'
23162 3' -53 NC_005178.1 + 24456 0.68 0.683606
Target:  5'- gCCGgucaucGUCGAGCUGUACaa-GGuCGCGa -3'
miRNA:   3'- -GGCa-----UAGCUCGACAUGcugCC-GUGCc -5'
23162 3' -53 NC_005178.1 + 12622 0.68 0.683606
Target:  5'- cCCGcagAUCGAgcguaaggccguGCUGUACGgcucgGCGGC-CGGc -3'
miRNA:   3'- -GGCa--UAGCU------------CGACAUGC-----UGCCGuGCC- -5'
23162 3' -53 NC_005178.1 + 17815 0.68 0.661298
Target:  5'- gCGacgGUCGAGC---GCGGCGGuUACGGg -3'
miRNA:   3'- gGCa--UAGCUCGacaUGCUGCC-GUGCC- -5'
23162 3' -53 NC_005178.1 + 35215 0.68 0.661298
Target:  5'- uCCGgGUCGAuGCaGUcaacuACGccaGCGGCACGGu -3'
miRNA:   3'- -GGCaUAGCU-CGaCA-----UGC---UGCCGUGCC- -5'
23162 3' -53 NC_005178.1 + 26879 0.68 0.661298
Target:  5'- gCGUAUC-AGCgcagcucgaUGUcggACGACGaGCGCGGg -3'
miRNA:   3'- gGCAUAGcUCG---------ACA---UGCUGC-CGUGCC- -5'
23162 3' -53 NC_005178.1 + 7106 0.68 0.650096
Target:  5'- aCGUugGUCGAGCUGUucagcuCGuuGGCGCu- -3'
miRNA:   3'- gGCA--UAGCUCGACAu-----GCugCCGUGcc -5'
23162 3' -53 NC_005178.1 + 10285 0.69 0.627651
Target:  5'- -gGUaGUCGAGCagcuCGGCGGCACGu -3'
miRNA:   3'- ggCA-UAGCUCGacauGCUGCCGUGCc -5'
23162 3' -53 NC_005178.1 + 32865 0.69 0.592921
Target:  5'- uCCGUAUCGcgugacGCUG-ACGccgcagagcaucaGCGGCugGGu -3'
miRNA:   3'- -GGCAUAGCu-----CGACaUGC-------------UGCCGugCC- -5'
23162 3' -53 NC_005178.1 + 18491 0.7 0.571781
Target:  5'- aCCGUugcagcgCGAGCg--GCGAaggGGCGCGGc -3'
miRNA:   3'- -GGCAua-----GCUCGacaUGCUg--CCGUGCC- -5'
23162 3' -53 NC_005178.1 + 25411 0.71 0.517175
Target:  5'- gCgGUAggcgCGGGuCUGUGCGuCGGCGCaGGc -3'
miRNA:   3'- -GgCAUa---GCUC-GACAUGCuGCCGUG-CC- -5'
23162 3' -53 NC_005178.1 + 25089 0.74 0.342357
Target:  5'- gCCGUAUUggucguaGAGUUGUuugagggcaauuGCGGCGGCAuCGGg -3'
miRNA:   3'- -GGCAUAG-------CUCGACA------------UGCUGCCGU-GCC- -5'
23162 3' -53 NC_005178.1 + 19773 0.76 0.266419
Target:  5'- uCUGUAUCGGGCUGccguCGAaccCGGCAuCGGg -3'
miRNA:   3'- -GGCAUAGCUCGACau--GCU---GCCGU-GCC- -5'
23162 3' -53 NC_005178.1 + 32137 1.12 0.000884
Target:  5'- uCCGUAUCGAGCUGUACGACGGCACGGu -3'
miRNA:   3'- -GGCAUAGCUCGACAUGCUGCCGUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.