Results 1 - 20 of 20 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23162 | 3' | -53 | NC_005178.1 | + | 22788 | 0.66 | 0.800073 |
Target: 5'- gCCGaccugGUCGAGCaGUACGGCGagGCGu -3' miRNA: 3'- -GGCa----UAGCUCGaCAUGCUGCcgUGCc -5' |
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23162 | 3' | -53 | NC_005178.1 | + | 27654 | 0.66 | 0.769838 |
Target: 5'- aCGUGcCGccGCUGc-CGugGGCAUGGg -3' miRNA: 3'- gGCAUaGCu-CGACauGCugCCGUGCC- -5' |
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23162 | 3' | -53 | NC_005178.1 | + | 4501 | 0.66 | 0.759448 |
Target: 5'- -aGUGgugCGAGCUGgcCGAgCGGCAacgcucCGGc -3' miRNA: 3'- ggCAUa--GCUCGACauGCU-GCCGU------GCC- -5' |
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23162 | 3' | -53 | NC_005178.1 | + | 35106 | 0.67 | 0.748923 |
Target: 5'- gCCGc--CGAGCUGccGCuGGCGGC-CGGu -3' miRNA: 3'- -GGCauaGCUCGACa-UG-CUGCCGuGCC- -5' |
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23162 | 3' | -53 | NC_005178.1 | + | 17614 | 0.67 | 0.738274 |
Target: 5'- aCCGUG-CGcGCUcgaucacUGCGGCGGCACuGGc -3' miRNA: 3'- -GGCAUaGCuCGAc------AUGCUGCCGUG-CC- -5' |
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23162 | 3' | -53 | NC_005178.1 | + | 4071 | 0.67 | 0.716656 |
Target: 5'- gCCcUGUCGAGUgGUccaGGuCGGCACGGu -3' miRNA: 3'- -GGcAUAGCUCGaCAug-CU-GCCGUGCC- -5' |
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23162 | 3' | -53 | NC_005178.1 | + | 24456 | 0.68 | 0.683606 |
Target: 5'- gCCGgucaucGUCGAGCUGUACaa-GGuCGCGa -3' miRNA: 3'- -GGCa-----UAGCUCGACAUGcugCC-GUGCc -5' |
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23162 | 3' | -53 | NC_005178.1 | + | 12622 | 0.68 | 0.683606 |
Target: 5'- cCCGcagAUCGAgcguaaggccguGCUGUACGgcucgGCGGC-CGGc -3' miRNA: 3'- -GGCa--UAGCU------------CGACAUGC-----UGCCGuGCC- -5' |
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23162 | 3' | -53 | NC_005178.1 | + | 25832 | 0.68 | 0.683606 |
Target: 5'- -gGUGUCGuuCUcGUugGACGGCGCc- -3' miRNA: 3'- ggCAUAGCucGA-CAugCUGCCGUGcc -5' |
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23162 | 3' | -53 | NC_005178.1 | + | 35215 | 0.68 | 0.661298 |
Target: 5'- uCCGgGUCGAuGCaGUcaacuACGccaGCGGCACGGu -3' miRNA: 3'- -GGCaUAGCU-CGaCA-----UGC---UGCCGUGCC- -5' |
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23162 | 3' | -53 | NC_005178.1 | + | 26879 | 0.68 | 0.661298 |
Target: 5'- gCGUAUC-AGCgcagcucgaUGUcggACGACGaGCGCGGg -3' miRNA: 3'- gGCAUAGcUCG---------ACA---UGCUGC-CGUGCC- -5' |
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23162 | 3' | -53 | NC_005178.1 | + | 17815 | 0.68 | 0.661298 |
Target: 5'- gCGacgGUCGAGC---GCGGCGGuUACGGg -3' miRNA: 3'- gGCa--UAGCUCGacaUGCUGCC-GUGCC- -5' |
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23162 | 3' | -53 | NC_005178.1 | + | 7106 | 0.68 | 0.650096 |
Target: 5'- aCGUugGUCGAGCUGUucagcuCGuuGGCGCu- -3' miRNA: 3'- gGCA--UAGCUCGACAu-----GCugCCGUGcc -5' |
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23162 | 3' | -53 | NC_005178.1 | + | 10285 | 0.69 | 0.627651 |
Target: 5'- -gGUaGUCGAGCagcuCGGCGGCACGu -3' miRNA: 3'- ggCA-UAGCUCGacauGCUGCCGUGCc -5' |
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23162 | 3' | -53 | NC_005178.1 | + | 32865 | 0.69 | 0.592921 |
Target: 5'- uCCGUAUCGcgugacGCUG-ACGccgcagagcaucaGCGGCugGGu -3' miRNA: 3'- -GGCAUAGCu-----CGACaUGC-------------UGCCGugCC- -5' |
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23162 | 3' | -53 | NC_005178.1 | + | 18491 | 0.7 | 0.571781 |
Target: 5'- aCCGUugcagcgCGAGCg--GCGAaggGGCGCGGc -3' miRNA: 3'- -GGCAua-----GCUCGacaUGCUg--CCGUGCC- -5' |
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23162 | 3' | -53 | NC_005178.1 | + | 25411 | 0.71 | 0.517175 |
Target: 5'- gCgGUAggcgCGGGuCUGUGCGuCGGCGCaGGc -3' miRNA: 3'- -GgCAUa---GCUC-GACAUGCuGCCGUG-CC- -5' |
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23162 | 3' | -53 | NC_005178.1 | + | 25089 | 0.74 | 0.342357 |
Target: 5'- gCCGUAUUggucguaGAGUUGUuugagggcaauuGCGGCGGCAuCGGg -3' miRNA: 3'- -GGCAUAG-------CUCGACA------------UGCUGCCGU-GCC- -5' |
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23162 | 3' | -53 | NC_005178.1 | + | 19773 | 0.76 | 0.266419 |
Target: 5'- uCUGUAUCGGGCUGccguCGAaccCGGCAuCGGg -3' miRNA: 3'- -GGCAUAGCUCGACau--GCU---GCCGU-GCC- -5' |
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23162 | 3' | -53 | NC_005178.1 | + | 32137 | 1.12 | 0.000884 |
Target: 5'- uCCGUAUCGAGCUGUACGACGGCACGGu -3' miRNA: 3'- -GGCAUAGCUCGACAUGCUGCCGUGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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