miRNA display CGI


Results 21 - 40 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23162 5' -59.5 NC_005178.1 + 22674 0.68 0.280059
Target:  5'- aGCCcaggGCGaCCUCGcCCAG-GCCGAGCUg -3'
miRNA:   3'- gCGG----CGUaGGAGU-GGUCgUGGCUCGA- -5'
23162 5' -59.5 NC_005178.1 + 17109 0.68 0.280059
Target:  5'- aCGuCCGCGUCCUgGgCCAG-GCCGAGg- -3'
miRNA:   3'- -GC-GGCGUAGGAgU-GGUCgUGGCUCga -5'
23162 5' -59.5 NC_005178.1 + 9325 0.68 0.273012
Target:  5'- aCGCCGUuUCCUgCGCCuGCGaCGAGUg -3'
miRNA:   3'- -GCGGCGuAGGA-GUGGuCGUgGCUCGa -5'
23162 5' -59.5 NC_005178.1 + 35561 0.68 0.273012
Target:  5'- gGCCGCGaCCUCu---GCugCGAGCg -3'
miRNA:   3'- gCGGCGUaGGAGugguCGugGCUCGa -5'
23162 5' -59.5 NC_005178.1 + 28249 0.68 0.266108
Target:  5'- cCGCUGCcgCCUCGCUGGcCGCCGccaauGGUg -3'
miRNA:   3'- -GCGGCGuaGGAGUGGUC-GUGGC-----UCGa -5'
23162 5' -59.5 NC_005178.1 + 24878 0.68 0.262034
Target:  5'- gGCCGCAggcaaccaggccacCCgccagcgCGCCGGcCGCCGAGCc -3'
miRNA:   3'- gCGGCGUa-------------GGa------GUGGUC-GUGGCUCGa -5'
23162 5' -59.5 NC_005178.1 + 8693 0.69 0.252725
Target:  5'- uGCCGCAUcgauggCCUCAUCgAGCugCGGGa- -3'
miRNA:   3'- gCGGCGUA------GGAGUGG-UCGugGCUCga -5'
23162 5' -59.5 NC_005178.1 + 37468 0.69 0.236162
Target:  5'- gGCCGaguucagCCUCACCGaggaccagcgcgaauGCAUCGAGCa -3'
miRNA:   3'- gCGGCgua----GGAGUGGU---------------CGUGGCUCGa -5'
23162 5' -59.5 NC_005178.1 + 15774 0.69 0.233696
Target:  5'- uCGCCGCcgCCUgGCUGGCguuggaaaGCgGAGCg -3'
miRNA:   3'- -GCGGCGuaGGAgUGGUCG--------UGgCUCGa -5'
23162 5' -59.5 NC_005178.1 + 494 0.69 0.221689
Target:  5'- uGCUGCcgCCUCGuCCAGCgaGCCG-GCc -3'
miRNA:   3'- gCGGCGuaGGAGU-GGUCG--UGGCuCGa -5'
23162 5' -59.5 NC_005178.1 + 19475 0.7 0.215885
Target:  5'- uGCgGCAggUUCGCCAGCugcucgcgagcgACCGGGCUg -3'
miRNA:   3'- gCGgCGUagGAGUGGUCG------------UGGCUCGA- -5'
23162 5' -59.5 NC_005178.1 + 10788 0.7 0.199251
Target:  5'- cCGCCGcCAUCCUgGCCgAGCccaGCCgcGAGCg -3'
miRNA:   3'- -GCGGC-GUAGGAgUGG-UCG---UGG--CUCGa -5'
23162 5' -59.5 NC_005178.1 + 33016 0.7 0.193436
Target:  5'- aCGCCGgacccgaucuuuaCAUCCUgGgCGGCACCGAGg- -3'
miRNA:   3'- -GCGGC-------------GUAGGAgUgGUCGUGGCUCga -5'
23162 5' -59.5 NC_005178.1 + 4149 0.71 0.164732
Target:  5'- gGCCGCuUCCUCugCAcCGCaGAGCUg -3'
miRNA:   3'- gCGGCGuAGGAGugGUcGUGgCUCGA- -5'
23162 5' -59.5 NC_005178.1 + 20736 0.71 0.164732
Target:  5'- uCGCCGC--CCUgACCcaacagcagAGCGCCGGGCg -3'
miRNA:   3'- -GCGGCGuaGGAgUGG---------UCGUGGCUCGa -5'
23162 5' -59.5 NC_005178.1 + 5799 0.71 0.160263
Target:  5'- uCGCCgGCAUuaCCUCggGCCAgGCGCUGGGCUc -3'
miRNA:   3'- -GCGG-CGUA--GGAG--UGGU-CGUGGCUCGA- -5'
23162 5' -59.5 NC_005178.1 + 10042 0.73 0.131937
Target:  5'- -aCCGCGcUCCUgGCCAGCGCCcaucgccccugGAGCUa -3'
miRNA:   3'- gcGGCGU-AGGAgUGGUCGUGG-----------CUCGA- -5'
23162 5' -59.5 NC_005178.1 + 28187 0.73 0.117897
Target:  5'- uGCUGCGguUCCUCACCGcgagcGCGCCGuGCc -3'
miRNA:   3'- gCGGCGU--AGGAGUGGU-----CGUGGCuCGa -5'
23162 5' -59.5 NC_005178.1 + 15647 0.74 0.099427
Target:  5'- aGCaGCAUCUUCGCCacgucuuccAGCGCCGGGCc -3'
miRNA:   3'- gCGgCGUAGGAGUGG---------UCGUGGCUCGa -5'
23162 5' -59.5 NC_005178.1 + 7038 0.75 0.088668
Target:  5'- gCGUCGUGUCCUgGCC-GCGCUGAGCc -3'
miRNA:   3'- -GCGGCGUAGGAgUGGuCGUGGCUCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.