Results 21 - 28 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23163 | 3' | -58.9 | NC_005178.1 | + | 26461 | 0.72 | 0.170724 |
Target: 5'- --cGGCGCUGCCgGCCGAgGUGGaugCGGg -3' miRNA: 3'- acaUCGCGGCGG-UGGCUgCACCa--GCU- -5' |
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23163 | 3' | -58.9 | NC_005178.1 | + | 27655 | 0.68 | 0.31841 |
Target: 5'- ---cGUGCCGCCGCUGcCGUGGgcaUGGg -3' miRNA: 3'- acauCGCGGCGGUGGCuGCACCa--GCU- -5' |
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23163 | 3' | -58.9 | NC_005178.1 | + | 31583 | 0.66 | 0.451155 |
Target: 5'- --cAGUGaCCGCCGCCGGCcuggaccUGGUCc- -3' miRNA: 3'- acaUCGC-GGCGGUGGCUGc------ACCAGcu -5' |
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23163 | 3' | -58.9 | NC_005178.1 | + | 31815 | 0.7 | 0.235 |
Target: 5'- --gAG-GCCGCCACCGAUGcGG-CGAu -3' miRNA: 3'- acaUCgCGGCGGUGGCUGCaCCaGCU- -5' |
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23163 | 3' | -58.9 | NC_005178.1 | + | 32014 | 0.67 | 0.359212 |
Target: 5'- --gGGUGCCGacccaCGCCGACGaccugacccUGGUCGc -3' miRNA: 3'- acaUCGCGGCg----GUGGCUGC---------ACCAGCu -5' |
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23163 | 3' | -58.9 | NC_005178.1 | + | 32211 | 0.68 | 0.30611 |
Target: 5'- --gAGCGUUugGCCAUCGACGccgcccugggccgccUGGUCGAg -3' miRNA: 3'- acaUCGCGG--CGGUGGCUGC---------------ACCAGCU- -5' |
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23163 | 3' | -58.9 | NC_005178.1 | + | 32288 | 1.08 | 0.000314 |
Target: 5'- cUGUAGCGCCGCCACCGACGUGGUCGAg -3' miRNA: 3'- -ACAUCGCGGCGGUGGCUGCACCAGCU- -5' |
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23163 | 3' | -58.9 | NC_005178.1 | + | 34836 | 0.71 | 0.19535 |
Target: 5'- cGUGGCGCCGCCACCacCG-GGcUGGa -3' miRNA: 3'- aCAUCGCGGCGGUGGcuGCaCCaGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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