miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23163 5' -57.2 NC_005178.1 + 33074 0.66 0.497796
Target:  5'- ---uGCCGGUAGCGcuGGGCGggaGCGGu -3'
miRNA:   3'- gcagUGGCUAUCGCu-CCCGCag-CGUU- -5'
23163 5' -57.2 NC_005178.1 + 16645 0.66 0.497796
Target:  5'- gCGUC-CUGG-AGCG-GGGUGUUGCGGu -3'
miRNA:   3'- -GCAGuGGCUaUCGCuCCCGCAGCGUU- -5'
23163 5' -57.2 NC_005178.1 + 23701 0.66 0.487299
Target:  5'- cCGgcaaGCCGGUGGCGcAGGGCGaCGa-- -3'
miRNA:   3'- -GCag--UGGCUAUCGC-UCCCGCaGCguu -5'
23163 5' -57.2 NC_005178.1 + 6393 0.66 0.456463
Target:  5'- gCGUCugCGcUcgauugucgcGGCGAGGcGCGcCGCGAu -3'
miRNA:   3'- -GCAGugGCuA----------UCGCUCC-CGCaGCGUU- -5'
23163 5' -57.2 NC_005178.1 + 2812 0.67 0.446419
Target:  5'- gGUCGCCGAUGcccGCcaGGGGGUGcUGCAc -3'
miRNA:   3'- gCAGUGGCUAU---CG--CUCCCGCaGCGUu -5'
23163 5' -57.2 NC_005178.1 + 340 0.67 0.407521
Target:  5'- gGUCcggcgcuguGCCGGUAGCGAuGGCGUCa--- -3'
miRNA:   3'- gCAG---------UGGCUAUCGCUcCCGCAGcguu -5'
23163 5' -57.2 NC_005178.1 + 10307 0.68 0.398133
Target:  5'- aCGUCcugGCgGAUAGcCGAGGGCcgggCGCGGa -3'
miRNA:   3'- -GCAG---UGgCUAUC-GCUCCCGca--GCGUU- -5'
23163 5' -57.2 NC_005178.1 + 12909 0.68 0.370816
Target:  5'- uGUCAUCGA---CGGGGGUGUCGUu- -3'
miRNA:   3'- gCAGUGGCUaucGCUCCCGCAGCGuu -5'
23163 5' -57.2 NC_005178.1 + 28555 0.69 0.336433
Target:  5'- cCGUcCGCCGcgccacCGGGGGCGUCGCc- -3'
miRNA:   3'- -GCA-GUGGCuauc--GCUCCCGCAGCGuu -5'
23163 5' -57.2 NC_005178.1 + 23333 0.69 0.317741
Target:  5'- uCGUCuACCug-GGCGAcgagaucggcaccgGGGCGUCGCAc -3'
miRNA:   3'- -GCAG-UGGcuaUCGCU--------------CCCGCAGCGUu -5'
23163 5' -57.2 NC_005178.1 + 24777 0.71 0.250187
Target:  5'- ---uGCCGGUcgaggacguaggcgcGGCGcAGGGCGUCGCGGg -3'
miRNA:   3'- gcagUGGCUA---------------UCGC-UCCCGCAGCGUU- -5'
23163 5' -57.2 NC_005178.1 + 32323 1.06 0.000601
Target:  5'- aCGUCACCGAUAGCGAGGGCGUCGCAAc -3'
miRNA:   3'- -GCAGUGGCUAUCGCUCCCGCAGCGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.