Results 1 - 12 of 12 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23163 | 5' | -57.2 | NC_005178.1 | + | 16645 | 0.66 | 0.497796 |
Target: 5'- gCGUC-CUGG-AGCG-GGGUGUUGCGGu -3' miRNA: 3'- -GCAGuGGCUaUCGCuCCCGCAGCGUU- -5' |
|||||||
23163 | 5' | -57.2 | NC_005178.1 | + | 33074 | 0.66 | 0.497796 |
Target: 5'- ---uGCCGGUAGCGcuGGGCGggaGCGGu -3' miRNA: 3'- gcagUGGCUAUCGCu-CCCGCag-CGUU- -5' |
|||||||
23163 | 5' | -57.2 | NC_005178.1 | + | 23701 | 0.66 | 0.487299 |
Target: 5'- cCGgcaaGCCGGUGGCGcAGGGCGaCGa-- -3' miRNA: 3'- -GCag--UGGCUAUCGC-UCCCGCaGCguu -5' |
|||||||
23163 | 5' | -57.2 | NC_005178.1 | + | 6393 | 0.66 | 0.456463 |
Target: 5'- gCGUCugCGcUcgauugucgcGGCGAGGcGCGcCGCGAu -3' miRNA: 3'- -GCAGugGCuA----------UCGCUCC-CGCaGCGUU- -5' |
|||||||
23163 | 5' | -57.2 | NC_005178.1 | + | 2812 | 0.67 | 0.446419 |
Target: 5'- gGUCGCCGAUGcccGCcaGGGGGUGcUGCAc -3' miRNA: 3'- gCAGUGGCUAU---CG--CUCCCGCaGCGUu -5' |
|||||||
23163 | 5' | -57.2 | NC_005178.1 | + | 340 | 0.67 | 0.407521 |
Target: 5'- gGUCcggcgcuguGCCGGUAGCGAuGGCGUCa--- -3' miRNA: 3'- gCAG---------UGGCUAUCGCUcCCGCAGcguu -5' |
|||||||
23163 | 5' | -57.2 | NC_005178.1 | + | 10307 | 0.68 | 0.398133 |
Target: 5'- aCGUCcugGCgGAUAGcCGAGGGCcgggCGCGGa -3' miRNA: 3'- -GCAG---UGgCUAUC-GCUCCCGca--GCGUU- -5' |
|||||||
23163 | 5' | -57.2 | NC_005178.1 | + | 12909 | 0.68 | 0.370816 |
Target: 5'- uGUCAUCGA---CGGGGGUGUCGUu- -3' miRNA: 3'- gCAGUGGCUaucGCUCCCGCAGCGuu -5' |
|||||||
23163 | 5' | -57.2 | NC_005178.1 | + | 28555 | 0.69 | 0.336433 |
Target: 5'- cCGUcCGCCGcgccacCGGGGGCGUCGCc- -3' miRNA: 3'- -GCA-GUGGCuauc--GCUCCCGCAGCGuu -5' |
|||||||
23163 | 5' | -57.2 | NC_005178.1 | + | 23333 | 0.69 | 0.317741 |
Target: 5'- uCGUCuACCug-GGCGAcgagaucggcaccgGGGCGUCGCAc -3' miRNA: 3'- -GCAG-UGGcuaUCGCU--------------CCCGCAGCGUu -5' |
|||||||
23163 | 5' | -57.2 | NC_005178.1 | + | 24777 | 0.71 | 0.250187 |
Target: 5'- ---uGCCGGUcgaggacguaggcgcGGCGcAGGGCGUCGCGGg -3' miRNA: 3'- gcagUGGCUA---------------UCGC-UCCCGCAGCGUU- -5' |
|||||||
23163 | 5' | -57.2 | NC_005178.1 | + | 32323 | 1.06 | 0.000601 |
Target: 5'- aCGUCACCGAUAGCGAGGGCGUCGCAAc -3' miRNA: 3'- -GCAGUGGCUAUCGCUCCCGCAGCGUU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home