Results 1 - 20 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23164 | 3' | -56.1 | NC_005178.1 | + | 36209 | 0.74 | 0.197552 |
Target: 5'- aGCUGguagGCGGGAUggCCGacgCGCCGAGCg -3' miRNA: 3'- aCGACa---UGUUCUG--GGCca-GCGGCUCG- -5' |
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23164 | 3' | -56.1 | NC_005178.1 | + | 35958 | 0.67 | 0.473175 |
Target: 5'- aGCUcggGCGGGACUCGaccaggCGUCGAGCa -3' miRNA: 3'- aCGAca-UGUUCUGGGCca----GCGGCUCG- -5' |
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23164 | 3' | -56.1 | NC_005178.1 | + | 34990 | 0.68 | 0.423128 |
Target: 5'- cGCUGgcCGAGGCgCCGaccagccuGUCGCaGAGCu -3' miRNA: 3'- aCGACauGUUCUG-GGC--------CAGCGgCUCG- -5' |
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23164 | 3' | -56.1 | NC_005178.1 | + | 34354 | 0.68 | 0.452786 |
Target: 5'- uUGCgcagGaACGcauAGACCUGGUCcagGCUGGGCa -3' miRNA: 3'- -ACGa---CaUGU---UCUGGGCCAG---CGGCUCG- -5' |
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23164 | 3' | -56.1 | NC_005178.1 | + | 33710 | 0.67 | 0.494016 |
Target: 5'- cUGCUGUGCGG---CCGGUCGuuGuacucGGCa -3' miRNA: 3'- -ACGACAUGUUcugGGCCAGCggC-----UCG- -5' |
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23164 | 3' | -56.1 | NC_005178.1 | + | 32902 | 0.66 | 0.580953 |
Target: 5'- gGCUGggugaucucCAGcGGCgUGGUCGCCG-GCa -3' miRNA: 3'- aCGACau-------GUU-CUGgGCCAGCGGCuCG- -5' |
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23164 | 3' | -56.1 | NC_005178.1 | + | 32617 | 1.12 | 0.0003 |
Target: 5'- cUGCUGUACAAGACCCGGUCGCCGAGCg -3' miRNA: 3'- -ACGACAUGUUCUGGGCCAGCGGCUCG- -5' |
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23164 | 3' | -56.1 | NC_005178.1 | + | 30461 | 0.67 | 0.477308 |
Target: 5'- cGCUGcACucGACCgaGGUCaccgccucgcccaggGCCGGGCa -3' miRNA: 3'- aCGACaUGuuCUGGg-CCAG---------------CGGCUCG- -5' |
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23164 | 3' | -56.1 | NC_005178.1 | + | 28880 | 0.66 | 0.569847 |
Target: 5'- cGCgaacCcAGACCUGGUCGCggcUGGGCa -3' miRNA: 3'- aCGacauGuUCUGGGCCAGCG---GCUCG- -5' |
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23164 | 3' | -56.1 | NC_005178.1 | + | 28713 | 0.66 | 0.569847 |
Target: 5'- gGC-GU-CGGGgcucacACCCGGcacgCGCCGGGCg -3' miRNA: 3'- aCGaCAuGUUC------UGGGCCa---GCGGCUCG- -5' |
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23164 | 3' | -56.1 | NC_005178.1 | + | 26462 | 0.75 | 0.153969 |
Target: 5'- gGCUGUuucGGAUaCGGUCGCCGAGUu -3' miRNA: 3'- aCGACAuguUCUGgGCCAGCGGCUCG- -5' |
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23164 | 3' | -56.1 | NC_005178.1 | + | 21602 | 0.7 | 0.350072 |
Target: 5'- aUGCUGUuaucgcGCAAGcgcagcucguCCUGGUCGuCCGGGUu -3' miRNA: 3'- -ACGACA------UGUUCu---------GGGCCAGC-GGCUCG- -5' |
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23164 | 3' | -56.1 | NC_005178.1 | + | 20444 | 0.69 | 0.385458 |
Target: 5'- gGcCUGgccCAGGACgCGGaCGUCGAGCa -3' miRNA: 3'- aC-GACau-GUUCUGgGCCaGCGGCUCG- -5' |
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23164 | 3' | -56.1 | NC_005178.1 | + | 19742 | 0.69 | 0.404015 |
Target: 5'- uUGUUGUACAGcACCUGGUC-CaucaGGGCg -3' miRNA: 3'- -ACGACAUGUUcUGGGCCAGcGg---CUCG- -5' |
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23164 | 3' | -56.1 | NC_005178.1 | + | 19107 | 0.67 | 0.504593 |
Target: 5'- gGCUGgacgAUGAGGCUCGcucCGCCGaAGCg -3' miRNA: 3'- aCGACa---UGUUCUGGGCca-GCGGC-UCG- -5' |
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23164 | 3' | -56.1 | NC_005178.1 | + | 18057 | 0.66 | 0.569847 |
Target: 5'- ---cGUaACA--GCCCGGUCGCucgCGAGCa -3' miRNA: 3'- acgaCA-UGUucUGGGCCAGCG---GCUCG- -5' |
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23164 | 3' | -56.1 | NC_005178.1 | + | 17883 | 0.71 | 0.293875 |
Target: 5'- ---cGUGCuccuGGACCCGGUaCGCC-AGCg -3' miRNA: 3'- acgaCAUGu---UCUGGGCCA-GCGGcUCG- -5' |
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23164 | 3' | -56.1 | NC_005178.1 | + | 17610 | 0.66 | 0.5478 |
Target: 5'- cGCUGUGCGucGCCgUGGUCugacgGUCGAGUc -3' miRNA: 3'- aCGACAUGUucUGG-GCCAG-----CGGCUCG- -5' |
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23164 | 3' | -56.1 | NC_005178.1 | + | 17321 | 0.7 | 0.341594 |
Target: 5'- cGCcGgacgGCGGGGCCgaGGUCGCCcAGCu -3' miRNA: 3'- aCGaCa---UGUUCUGGg-CCAGCGGcUCG- -5' |
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23164 | 3' | -56.1 | NC_005178.1 | + | 16606 | 0.66 | 0.558793 |
Target: 5'- aGCUGggcgucCAGGugCCGGUCaaCUGGGUc -3' miRNA: 3'- aCGACau----GUUCugGGCCAGc-GGCUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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