miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23164 5' -53.1 NC_005178.1 + 4084 0.66 0.72445
Target:  5'- gCGACCaggUGGcCGUgggCUACGACAUcCACg -3'
miRNA:   3'- -GCUGG---ACCaGCA---GAUGCUGUAcGUGa -5'
23164 5' -53.1 NC_005178.1 + 4743 0.69 0.532266
Target:  5'- cCGGCCUGGUCugcuUCUACGGCccGUccgGCUu -3'
miRNA:   3'- -GCUGGACCAGc---AGAUGCUGuaCG---UGA- -5'
23164 5' -53.1 NC_005178.1 + 5525 0.67 0.645452
Target:  5'- gCGACCagggucaGGUCGUCgGCGugGgucgGCACc -3'
miRNA:   3'- -GCUGGa------CCAGCAGaUGCugUa---CGUGa -5'
23164 5' -53.1 NC_005178.1 + 12256 0.67 0.650022
Target:  5'- uCGACCUGGUCcgcacccugcugaagGUCaGCGcGgAUGCGCa -3'
miRNA:   3'- -GCUGGACCAG---------------CAGaUGC-UgUACGUGa -5'
23164 5' -53.1 NC_005178.1 + 12679 0.74 0.279817
Target:  5'- uGGCCUGGUUGcCUGCGGCcUGCucGCg -3'
miRNA:   3'- gCUGGACCAGCaGAUGCUGuACG--UGa -5'
23164 5' -53.1 NC_005178.1 + 14348 0.67 0.668268
Target:  5'- uGACCUGGUgGUCggcgACGACcUGgAg- -3'
miRNA:   3'- gCUGGACCAgCAGa---UGCUGuACgUga -5'
23164 5' -53.1 NC_005178.1 + 16372 0.66 0.75707
Target:  5'- aCGGUCUGGUCGUCcACGAUGUagGCGg- -3'
miRNA:   3'- -GCUGGACCAGCAGaUGCUGUA--CGUga -5'
23164 5' -53.1 NC_005178.1 + 22789 0.68 0.611157
Target:  5'- cCGACCUGGUCGagcagUACGGCGagGCGu- -3'
miRNA:   3'- -GCUGGACCAGCag---AUGCUGUa-CGUga -5'
23164 5' -53.1 NC_005178.1 + 26672 0.66 0.745235
Target:  5'- uGACCUucgcgaaGG-CGUCcuCGACGUGCGCc -3'
miRNA:   3'- gCUGGA-------CCaGCAGauGCUGUACGUGa -5'
23164 5' -53.1 NC_005178.1 + 28889 0.66 0.746318
Target:  5'- aGACCUGGUCGcggCUG-GGCAgGC-CUa -3'
miRNA:   3'- gCUGGACCAGCa--GAUgCUGUaCGuGA- -5'
23164 5' -53.1 NC_005178.1 + 29394 0.74 0.287243
Target:  5'- aCGACCUGGUCGUCcccacggGCGAUcucgaugGCGCc -3'
miRNA:   3'- -GCUGGACCAGCAGa------UGCUGua-----CGUGa -5'
23164 5' -53.1 NC_005178.1 + 30812 0.76 0.238446
Target:  5'- uCGACCUGGgccggCGUCUACG-CG-GCGCa -3'
miRNA:   3'- -GCUGGACCa----GCAGAUGCuGUaCGUGa -5'
23164 5' -53.1 NC_005178.1 + 32651 1.09 0.001181
Target:  5'- uCGACCUGGUCGUCUACGACAUGCACUa -3'
miRNA:   3'- -GCUGGACCAGCAGAUGCUGUACGUGA- -5'
23164 5' -53.1 NC_005178.1 + 33587 0.68 0.634018
Target:  5'- aCGugCUGGUCG-CgaccgGCGACGcgcucGCGCUc -3'
miRNA:   3'- -GCugGACCAGCaGa----UGCUGUa----CGUGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.