miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23165 5' -49.5 NC_005178.1 + 6062 0.66 0.905638
Target:  5'- aGUCGAgGCCGGCcgUGUCGcacGGAAUGu -3'
miRNA:   3'- gCGGCU-CGGUCGa-AUAGCa--CUUUAUg -5'
23165 5' -49.5 NC_005178.1 + 9673 0.66 0.882691
Target:  5'- uCGCCGAGCCGGCcgaggCGgucaccuUGCu -3'
miRNA:   3'- -GCGGCUCGGUCGaaua-GCacuuu--AUG- -5'
23165 5' -49.5 NC_005178.1 + 34593 0.66 0.882691
Target:  5'- gGCCGGGCgAGUcgGUgagCGgGAAAUGCg -3'
miRNA:   3'- gCGGCUCGgUCGaaUA---GCaCUUUAUG- -5'
23165 5' -49.5 NC_005178.1 + 21789 0.66 0.882691
Target:  5'- gGUCGAGCagCAGC---UCGUGgAGAUACu -3'
miRNA:   3'- gCGGCUCG--GUCGaauAGCAC-UUUAUG- -5'
23165 5' -49.5 NC_005178.1 + 16135 0.66 0.874436
Target:  5'- uGCCGAuCCGGC---UCGgGAAGUACc -3'
miRNA:   3'- gCGGCUcGGUCGaauAGCaCUUUAUG- -5'
23165 5' -49.5 NC_005178.1 + 14074 0.68 0.819121
Target:  5'- uGgUGAGCCAGauauUCGUGAucuGGUGCg -3'
miRNA:   3'- gCgGCUCGGUCgaauAGCACU---UUAUG- -5'
23165 5' -49.5 NC_005178.1 + 35001 0.68 0.809035
Target:  5'- gCGCCGA-CCAGCcUGUCGcaGAGcUACa -3'
miRNA:   3'- -GCGGCUcGGUCGaAUAGCa-CUUuAUG- -5'
23165 5' -49.5 NC_005178.1 + 7404 0.68 0.798733
Target:  5'- aGCCGAcGCCAcGCUUGUUGaGGGAg-- -3'
miRNA:   3'- gCGGCU-CGGU-CGAAUAGCaCUUUaug -5'
23165 5' -49.5 NC_005178.1 + 19906 0.68 0.777537
Target:  5'- uGCCGGGCUGGCggAUCGaUGccgccAGUGCc -3'
miRNA:   3'- gCGGCUCGGUCGaaUAGC-ACu----UUAUG- -5'
23165 5' -49.5 NC_005178.1 + 8137 0.7 0.698592
Target:  5'- -aCCGAGCCAGCgcccggcgggAUCGcgGAGAUAg -3'
miRNA:   3'- gcGGCUCGGUCGaa--------UAGCa-CUUUAUg -5'
23165 5' -49.5 NC_005178.1 + 4991 0.7 0.6869
Target:  5'- uCGCCGcuGGCCaggucgAGCUgauUCGUGAucuGUACg -3'
miRNA:   3'- -GCGGC--UCGG------UCGAau-AGCACUu--UAUG- -5'
23165 5' -49.5 NC_005178.1 + 13138 0.71 0.651514
Target:  5'- gCGCCuGGCCAGCUUcAUcCGUGAGcgGu -3'
miRNA:   3'- -GCGGcUCGGUCGAA-UA-GCACUUuaUg -5'
23165 5' -49.5 NC_005178.1 + 3456 0.72 0.545523
Target:  5'- gGCCGAGUCGGCccugGUgGUGGucGAUGCc -3'
miRNA:   3'- gCGGCUCGGUCGaa--UAgCACU--UUAUG- -5'
23165 5' -49.5 NC_005178.1 + 34447 1.12 0.001512
Target:  5'- gCGCCGAGCCAGCUUAUCGUGAAAUACa -3'
miRNA:   3'- -GCGGCUCGGUCGAAUAGCACUUUAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.