Results 1 - 14 of 14 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23166 | 3' | -52.7 | NC_005178.1 | + | 20069 | 0.66 | 0.694702 |
Target: 5'- gAAGGCu-CCGGCCUGugggGGCGUg---- -3' miRNA: 3'- -UUCUGuuGGCCGGACu---UCGCGauauu -5' |
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23166 | 3' | -52.7 | NC_005178.1 | + | 2992 | 0.66 | 0.694702 |
Target: 5'- -uGGCuGCCGagcgugcgcaGCCUGGAGCGCUu--- -3' miRNA: 3'- uuCUGuUGGC----------CGGACUUCGCGAuauu -5' |
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23166 | 3' | -52.7 | NC_005178.1 | + | 9313 | 0.66 | 0.671184 |
Target: 5'- cGAGGCGGCagCGGCCUGGauagcggcGGCGCc---- -3' miRNA: 3'- -UUCUGUUG--GCCGGACU--------UCGCGauauu -5' |
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23166 | 3' | -52.7 | NC_005178.1 | + | 7469 | 0.67 | 0.600014 |
Target: 5'- cAGGGCAucaccCUGGCCUGGAGCGa----- -3' miRNA: 3'- -UUCUGUu----GGCCGGACUUCGCgauauu -5' |
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23166 | 3' | -52.7 | NC_005178.1 | + | 11883 | 0.68 | 0.564697 |
Target: 5'- cAGAUcGCCcaGGCCgugcggGAGGUGCUGUGAu -3' miRNA: 3'- uUCUGuUGG--CCGGa-----CUUCGCGAUAUU- -5' |
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23166 | 3' | -52.7 | NC_005178.1 | + | 20857 | 0.68 | 0.541452 |
Target: 5'- cAAGACccuGAaaGGCCaguaagGAGGCGCUAUGAc -3' miRNA: 3'- -UUCUG---UUggCCGGa-----CUUCGCGAUAUU- -5' |
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23166 | 3' | -52.7 | NC_005178.1 | + | 20599 | 0.68 | 0.518535 |
Target: 5'- -cGGCGGCgagcuggaCGGCCUGAucaacAGCGCUAUc- -3' miRNA: 3'- uuCUGUUG--------GCCGGACU-----UCGCGAUAuu -5' |
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23166 | 3' | -52.7 | NC_005178.1 | + | 1436 | 0.69 | 0.463093 |
Target: 5'- --cGCAGCCGGCCc---GCGCUAUAc -3' miRNA: 3'- uucUGUUGGCCGGacuuCGCGAUAUu -5' |
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23166 | 3' | -52.7 | NC_005178.1 | + | 27511 | 0.7 | 0.452376 |
Target: 5'- uGGGC-GCUGGCCaGGAGCGCgGUGAu -3' miRNA: 3'- uUCUGuUGGCCGGaCUUCGCGaUAUU- -5' |
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23166 | 3' | -52.7 | NC_005178.1 | + | 20690 | 0.71 | 0.381418 |
Target: 5'- aAGGACuugGCCGGCUUGAAGaGCUAc-- -3' miRNA: 3'- -UUCUGu--UGGCCGGACUUCgCGAUauu -5' |
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23166 | 3' | -52.7 | NC_005178.1 | + | 26909 | 0.72 | 0.344343 |
Target: 5'- gGAGAC-GCCGGCC-GggGCGUUGc-- -3' miRNA: 3'- -UUCUGuUGGCCGGaCuuCGCGAUauu -5' |
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23166 | 3' | -52.7 | NC_005178.1 | + | 2189 | 0.72 | 0.335488 |
Target: 5'- --aGCAGCCgGGCCUGGAGCgucacgcccugGCUGUAGa -3' miRNA: 3'- uucUGUUGG-CCGGACUUCG-----------CGAUAUU- -5' |
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23166 | 3' | -52.7 | NC_005178.1 | + | 12589 | 0.75 | 0.210244 |
Target: 5'- -cGACGGCC-GCCUGGAGCGCUu--- -3' miRNA: 3'- uuCUGUUGGcCGGACUUCGCGAuauu -5' |
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23166 | 3' | -52.7 | NC_005178.1 | + | 34626 | 1.04 | 0.001632 |
Target: 5'- gAAGACAACCGGCCUGAAGCGCUAUAAg -3' miRNA: 3'- -UUCUGUUGGCCGGACUUCGCGAUAUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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