miRNA display CGI

Results 1 - 10 of 10 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
23167	3'	-56.2	NC_005178.1	+	26679	0.66	0.525823
	Target:  5'- -uGggCACCCUggaaaccgcuuggaaGACCGUUG-CCGGGGu -3' miRNA:   3'- uuCuaGUGGGA---------------CUGGCAGCaGGUCCU- -5'
23167	3'	-56.2	NC_005178.1	+	8152	0.66	0.543313
	Target:  5'- cGAGAUCGCCCguggggacGACCagGUCGUUCGcGAa -3' miRNA:   3'- -UUCUAGUGGGa-------CUGG--CAGCAGGUcCU- -5'
23167	3'	-56.2	NC_005178.1	+	18275	0.66	0.565434
	Target:  5'- cGGGcUCGCCCUgGGCCGUUa--CAGGAg -3' miRNA:   3'- -UUCuAGUGGGA-CUGGCAGcagGUCCU- -5'
23167	3'	-56.2	NC_005178.1	+	5688	0.66	0.532358
	Target:  5'- gGGGaAUCGCgCUG-CCGUUGUCCAagguGGAc -3' miRNA:   3'- -UUC-UAGUGgGACuGGCAGCAGGU----CCU- -5'
23167	3'	-56.2	NC_005178.1	+	34722	0.67	0.489411
	Target:  5'- -cGG-CAuCCCUGAaaCCGUCGUUCGGGu -3' miRNA:   3'- uuCUaGU-GGGACU--GGCAGCAGGUCCu -5'
23167	3'	-56.2	NC_005178.1	+	17838	0.67	0.500004
	Target:  5'- cGAGcgCACCCUGggagcgccuGCCGcCcucggcgagGUCCAGGAc -3' miRNA:   3'- -UUCuaGUGGGAC---------UGGCaG---------CAGGUCCU- -5'
23167	3'	-56.2	NC_005178.1	+	11148	0.7	0.320727
	Target:  5'- -cGggCGCCCUGGCCGcCGcCCuGGGc -3' miRNA:   3'- uuCuaGUGGGACUGGCaGCaGGuCCU- -5'
23167	3'	-56.2	NC_005178.1	+	15889	0.7	0.326412
	Target:  5'- gAAGG-CGCCgUUGACCGcuucauagaccagcUCGUCCGGGAg -3' miRNA:   3'- -UUCUaGUGG-GACUGGC--------------AGCAGGUCCU- -5'
23167	3'	-56.2	NC_005178.1	+	14104	0.77	0.100996
	Target:  5'- -cGggCGCCCUGGCCGUCGcCCuGGGc -3' miRNA:   3'- uuCuaGUGGGACUGGCAGCaGGuCCU- -5'
23167	3'	-56.2	NC_005178.1	+	34782	1.06	0.000735
	Target:  5'- cAAGAUCACCCUGACCGUCGUCCAGGAu -3' miRNA:   3'- -UUCUAGUGGGACUGGCAGCAGGUCCU- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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