miRNA display CGI


Results 21 - 40 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23167 5' -60.7 NC_005178.1 + 17809 0.67 0.319065
Target:  5'- -aUGgUGGCGACggUCGaGCGcGGCGg -3'
miRNA:   3'- agACgGCCGCUGuuGGC-CGCaCCGCg -5'
23167 5' -60.7 NC_005178.1 + 36785 0.67 0.311406
Target:  5'- gCUGCU--UGAUAGCCGGCGagcauUGGCGa -3'
miRNA:   3'- aGACGGccGCUGUUGGCCGC-----ACCGCg -5'
23167 5' -60.7 NC_005178.1 + 26401 0.67 0.311406
Target:  5'- --aGCCcagGGCGGCGGCCagGGCGcccGCGCu -3'
miRNA:   3'- agaCGG---CCGCUGUUGG--CCGCac-CGCG- -5'
23167 5' -60.7 NC_005178.1 + 2378 0.67 0.310648
Target:  5'- aCUGCggccUGGcCGACAgugacguccuccaGCCGGC-UGGCGUu -3'
miRNA:   3'- aGACG----GCC-GCUGU-------------UGGCCGcACCGCG- -5'
23167 5' -60.7 NC_005178.1 + 9338 0.67 0.303888
Target:  5'- --cGCCuGCGACGaguGCCuGGCacGGCGCg -3'
miRNA:   3'- agaCGGcCGCUGU---UGG-CCGcaCCGCG- -5'
23167 5' -60.7 NC_005178.1 + 11961 0.67 0.303888
Target:  5'- gUUGCuCGGCuGCAACUGcuguucGCG-GGCGCg -3'
miRNA:   3'- aGACG-GCCGcUGUUGGC------CGCaCCGCG- -5'
23167 5' -60.7 NC_005178.1 + 16816 0.67 0.29651
Target:  5'- cUCUGCUguugggucagGGCGGCGAUgGGCuUGGCc- -3'
miRNA:   3'- -AGACGG----------CCGCUGUUGgCCGcACCGcg -5'
23167 5' -60.7 NC_005178.1 + 31699 0.67 0.29651
Target:  5'- --gGCCGGUGuaGCGGCCuGGCuugagGGCGUa -3'
miRNA:   3'- agaCGGCCGC--UGUUGG-CCGca---CCGCG- -5'
23167 5' -60.7 NC_005178.1 + 14930 0.67 0.284997
Target:  5'- uUCUGCgCGGCGAUggucaguugacugauGGCCagGGUGUGuCGCu -3'
miRNA:   3'- -AGACG-GCCGCUG---------------UUGG--CCGCACcGCG- -5'
23167 5' -60.7 NC_005178.1 + 22471 0.67 0.282174
Target:  5'- cUUGCCGGaCGACGucGgCGGCGagGGUGa -3'
miRNA:   3'- aGACGGCC-GCUGU--UgGCCGCa-CCGCg -5'
23167 5' -60.7 NC_005178.1 + 32423 0.68 0.275214
Target:  5'- --aGCCGGUG-CGGCUGuaucaguucaGcCGUGGCGCg -3'
miRNA:   3'- agaCGGCCGCuGUUGGC----------C-GCACCGCG- -5'
23167 5' -60.7 NC_005178.1 + 9662 0.68 0.267718
Target:  5'- --gGCCGGUGGCuucgccgAGCCGGCcgaGGCGg -3'
miRNA:   3'- agaCGGCCGCUG-------UUGGCCGca-CCGCg -5'
23167 5' -60.7 NC_005178.1 + 8753 0.68 0.261708
Target:  5'- cUUGCCgugGGCGACuugGCCaGCGUGcGgGCg -3'
miRNA:   3'- aGACGG---CCGCUGu--UGGcCGCAC-CgCG- -5'
23167 5' -60.7 NC_005178.1 + 11714 0.68 0.257763
Target:  5'- -aUGCCGGCcACGGCCauGGCGUcagacgugccgagcaGGCGg -3'
miRNA:   3'- agACGGCCGcUGUUGG--CCGCA---------------CCGCg -5'
23167 5' -60.7 NC_005178.1 + 21787 0.68 0.25516
Target:  5'- --aGCCaGGCGGCGGCgaaGGCagguuaUGGCGCu -3'
miRNA:   3'- agaCGG-CCGCUGUUGg--CCGc-----ACCGCG- -5'
23167 5' -60.7 NC_005178.1 + 11913 0.68 0.25516
Target:  5'- gCUGCCGGuCGAac-UCGGCgGUGGCu- -3'
miRNA:   3'- aGACGGCC-GCUguuGGCCG-CACCGcg -5'
23167 5' -60.7 NC_005178.1 + 22285 0.68 0.251296
Target:  5'- --cGUCGGgGccaucgucguggucuGCGGCCGGgaaGUGGCGCa -3'
miRNA:   3'- agaCGGCCgC---------------UGUUGGCCg--CACCGCG- -5'
23167 5' -60.7 NC_005178.1 + 28308 0.68 0.248746
Target:  5'- gCUGCCGG-GGCcGCUGGaGUGGCu- -3'
miRNA:   3'- aGACGGCCgCUGuUGGCCgCACCGcg -5'
23167 5' -60.7 NC_005178.1 + 10296 0.69 0.2309
Target:  5'- --aGCuCGGCGGCAcgucCUGGCGgauagccgagggccgGGCGCg -3'
miRNA:   3'- agaCG-GCCGCUGUu---GGCCGCa--------------CCGCG- -5'
23167 5' -60.7 NC_005178.1 + 28496 0.69 0.230304
Target:  5'- --gGCCGGUGACcg-CGaGCGcGGCGCg -3'
miRNA:   3'- agaCGGCCGCUGuugGC-CGCaCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.