miRNA display CGI


Results 21 - 40 of 74 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23168 5' -59.5 NC_005178.1 + 26920 0.67 0.367586
Target:  5'- cCGgGGCguUGCGCCccggcuuagugGAcaggguggauugcUGCgGUGCCGGCu -3'
miRNA:   3'- -GCgCCG--ACGCGG-----------CU-------------AUGgCAUGGCCG- -5'
23168 5' -59.5 NC_005178.1 + 12005 0.67 0.359912
Target:  5'- cCG-GGCUGCuGCCGAggucuuCCGaaugACCuGGCg -3'
miRNA:   3'- -GCgCCGACG-CGGCUau----GGCa---UGG-CCG- -5'
23168 5' -59.5 NC_005178.1 + 11464 0.67 0.359912
Target:  5'- uGCGGCaGCGUccgccccucgggCGAUgucguccagGCCGUcGCUGGCg -3'
miRNA:   3'- gCGCCGaCGCG------------GCUA---------UGGCA-UGGCCG- -5'
23168 5' -59.5 NC_005178.1 + 8585 0.67 0.352352
Target:  5'- aGgGGCgcgcagggucaccugGCGCaCGGcgaugGCCGUGCCGGa -3'
miRNA:   3'- gCgCCGa--------------CGCG-GCUa----UGGCAUGGCCg -5'
23168 5' -59.5 NC_005178.1 + 31308 0.67 0.351518
Target:  5'- gCGCcgGGCUauGCGCCuGGcGCCGcGCCGGg -3'
miRNA:   3'- -GCG--CCGA--CGCGG-CUaUGGCaUGGCCg -5'
23168 5' -59.5 NC_005178.1 + 5252 0.67 0.349027
Target:  5'- uCGCGGUuaaccuggagcaguUG-GCCGAggccgccACCGUucaggGCCGGCg -3'
miRNA:   3'- -GCGCCG--------------ACgCGGCUa------UGGCA-----UGGCCG- -5'
23168 5' -59.5 NC_005178.1 + 26182 0.67 0.343264
Target:  5'- gCGCGGCggugGcCGCUGcgGgCGUggcGCUGGCu -3'
miRNA:   3'- -GCGCCGa---C-GCGGCuaUgGCA---UGGCCG- -5'
23168 5' -59.5 NC_005178.1 + 26617 0.67 0.33515
Target:  5'- gGCgGGCcGCGCCGG-AUCG-ACuCGGCg -3'
miRNA:   3'- gCG-CCGaCGCGGCUaUGGCaUG-GCCG- -5'
23168 5' -59.5 NC_005178.1 + 24904 0.68 0.327178
Target:  5'- aGCGcGCcgGcCGCCGA-GCCGUACagcaCGGCc -3'
miRNA:   3'- gCGC-CGa-C-GCGGCUaUGGCAUG----GCCG- -5'
23168 5' -59.5 NC_005178.1 + 33846 0.68 0.327178
Target:  5'- gGCGGUccaugucgGCGCCGAUguaGCCGggcaguuccuUGgCGGCg -3'
miRNA:   3'- gCGCCGa-------CGCGGCUA---UGGC----------AUgGCCG- -5'
23168 5' -59.5 NC_005178.1 + 21553 0.68 0.319347
Target:  5'- aCGCGGCuUGUGCaUGAUccaGCCGaa-CGGCu -3'
miRNA:   3'- -GCGCCG-ACGCG-GCUA---UGGCaugGCCG- -5'
23168 5' -59.5 NC_005178.1 + 31056 0.68 0.311657
Target:  5'- gGUGGCgGCGgUGAccugGCCGaACUGGCu -3'
miRNA:   3'- gCGCCGaCGCgGCUa---UGGCaUGGCCG- -5'
23168 5' -59.5 NC_005178.1 + 5111 0.68 0.311657
Target:  5'- aGCGGaucGCGCCacggcugaacuGAUacaGCCGcACCGGCu -3'
miRNA:   3'- gCGCCga-CGCGG-----------CUA---UGGCaUGGCCG- -5'
23168 5' -59.5 NC_005178.1 + 31663 0.68 0.304109
Target:  5'- gGCGGCgcgucucGCGCUGGacgaugggcgGCCGaggGCCGGUg -3'
miRNA:   3'- gCGCCGa------CGCGGCUa---------UGGCa--UGGCCG- -5'
23168 5' -59.5 NC_005178.1 + 18797 0.68 0.304109
Target:  5'- aGCGGCacauUGUGCCuAUugCGUAUUaGGCa -3'
miRNA:   3'- gCGCCG----ACGCGGcUAugGCAUGG-CCG- -5'
23168 5' -59.5 NC_005178.1 + 29496 0.68 0.296702
Target:  5'- cCGCugGGCUGCgGCCGAUAU---GCgGGCa -3'
miRNA:   3'- -GCG--CCGACG-CGGCUAUGgcaUGgCCG- -5'
23168 5' -59.5 NC_005178.1 + 17313 0.68 0.296702
Target:  5'- aGUGGUUGCGCCGGacggcgggGCCGaggucgcccaGCuCGGCa -3'
miRNA:   3'- gCGCCGACGCGGCUa-------UGGCa---------UG-GCCG- -5'
23168 5' -59.5 NC_005178.1 + 20211 0.68 0.292325
Target:  5'- gCGCgGGCUGCcgaGCUGGgcgaccucggccccGCCGU-CCGGCg -3'
miRNA:   3'- -GCG-CCGACG---CGGCUa-------------UGGCAuGGCCG- -5'
23168 5' -59.5 NC_005178.1 + 14090 0.68 0.289435
Target:  5'- gGcCGGCUucGCGCCGGgcgcccugGCCGUcGCCcugGGCg -3'
miRNA:   3'- gC-GCCGA--CGCGGCUa-------UGGCA-UGG---CCG- -5'
23168 5' -59.5 NC_005178.1 + 27562 0.68 0.289435
Target:  5'- uGCGGCacuuuugGCGUCGcccgGCCuUGCCGGUu -3'
miRNA:   3'- gCGCCGa------CGCGGCua--UGGcAUGGCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.