Results 1 - 20 of 30 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23169 | 3' | -58.4 | NC_005178.1 | + | 2149 | 0.67 | 0.379226 |
Target: 5'- gGCCaGCGCCGGggccaguuggcCCUCGCugguguucgUCAGCAGc -3' miRNA: 3'- -UGGaUGCGGCC-----------GGAGUGua-------GGUCGUC- -5' |
|||||||
23169 | 3' | -58.4 | NC_005178.1 | + | 2578 | 0.67 | 0.335246 |
Target: 5'- gGCCaGCG-CGGCCaaguaggacgcgcUCACGUCCAGgAGc -3' miRNA: 3'- -UGGaUGCgGCCGG-------------AGUGUAGGUCgUC- -5' |
|||||||
23169 | 3' | -58.4 | NC_005178.1 | + | 2734 | 0.66 | 0.397497 |
Target: 5'- cGCC-ACGCCGGUUgu-CG-CCGGCAGa -3' miRNA: 3'- -UGGaUGCGGCCGGaguGUaGGUCGUC- -5' |
|||||||
23169 | 3' | -58.4 | NC_005178.1 | + | 3331 | 0.68 | 0.319046 |
Target: 5'- uCCUGCGaCGGCCaCACGuucgacgccgaggUCCAGCAc -3' miRNA: 3'- uGGAUGCgGCCGGaGUGU-------------AGGUCGUc -5' |
|||||||
23169 | 3' | -58.4 | NC_005178.1 | + | 5353 | 0.66 | 0.406843 |
Target: 5'- gGCCaaACGCuCGGUgUCgGCGUCCAGCu- -3' miRNA: 3'- -UGGa-UGCG-GCCGgAG-UGUAGGUCGuc -5' |
|||||||
23169 | 3' | -58.4 | NC_005178.1 | + | 8311 | 0.66 | 0.406843 |
Target: 5'- aGCCgGCGCCGGCCgacucgUAgAUCguGCuGa -3' miRNA: 3'- -UGGaUGCGGCCGGa-----GUgUAGguCGuC- -5' |
|||||||
23169 | 3' | -58.4 | NC_005178.1 | + | 10737 | 0.66 | 0.425941 |
Target: 5'- aGCCc-CGCUGGCCacagCGCGUcCCGGCuGg -3' miRNA: 3'- -UGGauGCGGCCGGa---GUGUA-GGUCGuC- -5' |
|||||||
23169 | 3' | -58.4 | NC_005178.1 | + | 11665 | 0.68 | 0.31195 |
Target: 5'- gAUCUGCGCCGGCaacugcCGCAUggcCUGGCGGu -3' miRNA: 3'- -UGGAUGCGGCCGga----GUGUA---GGUCGUC- -5' |
|||||||
23169 | 3' | -58.4 | NC_005178.1 | + | 12131 | 0.69 | 0.272597 |
Target: 5'- cGCCUGCGCCGacgcacagacccgcGCCUaccgcgACGUCCuggAGCAGu -3' miRNA: 3'- -UGGAUGCGGC--------------CGGAg-----UGUAGG---UCGUC- -5' |
|||||||
23169 | 3' | -58.4 | NC_005178.1 | + | 12769 | 0.74 | 0.114378 |
Target: 5'- cCCUGCGCCGcGCCU-ACGUCCucgaccGGCAGu -3' miRNA: 3'- uGGAUGCGGC-CGGAgUGUAGG------UCGUC- -5' |
|||||||
23169 | 3' | -58.4 | NC_005178.1 | + | 12974 | 0.66 | 0.416325 |
Target: 5'- cGCCcagguCGCCGGUauccggCUUGCugguGUCCAGCAGg -3' miRNA: 3'- -UGGau---GCGGCCG------GAGUG----UAGGUCGUC- -5' |
|||||||
23169 | 3' | -58.4 | NC_005178.1 | + | 14224 | 0.68 | 0.31195 |
Target: 5'- cCCaggGCGCCGGCaagggcCGCGUCUGGCAa -3' miRNA: 3'- uGGa--UGCGGCCGga----GUGUAGGUCGUc -5' |
|||||||
23169 | 3' | -58.4 | NC_005178.1 | + | 16719 | 0.67 | 0.379226 |
Target: 5'- aGCCgGCGCCcuGGuCCUCGCAUcgcugcgcuggcCCAGguGa -3' miRNA: 3'- -UGGaUGCGG--CC-GGAGUGUA------------GGUCguC- -5' |
|||||||
23169 | 3' | -58.4 | NC_005178.1 | + | 19373 | 0.69 | 0.274714 |
Target: 5'- uACCUGCGCgGGCugCUCAagaaagCCGGCAu -3' miRNA: 3'- -UGGAUGCGgCCG--GAGUgua---GGUCGUc -5' |
|||||||
23169 | 3' | -58.4 | NC_005178.1 | + | 20689 | 0.69 | 0.281867 |
Target: 5'- uACCUcCG-CGGCUgaUCACAUCCAGgAGc -3' miRNA: 3'- -UGGAuGCgGCCGG--AGUGUAGGUCgUC- -5' |
|||||||
23169 | 3' | -58.4 | NC_005178.1 | + | 20751 | 0.67 | 0.361526 |
Target: 5'- uCCUGgGCCGGCaggCugG-CCAGCAc -3' miRNA: 3'- uGGAUgCGGCCGga-GugUaGGUCGUc -5' |
|||||||
23169 | 3' | -58.4 | NC_005178.1 | + | 20869 | 0.75 | 0.10198 |
Target: 5'- uGCCUGCGCCGGCCUgAUcgCC--CAGg -3' miRNA: 3'- -UGGAUGCGGCCGGAgUGuaGGucGUC- -5' |
|||||||
23169 | 3' | -58.4 | NC_005178.1 | + | 22345 | 0.68 | 0.31195 |
Target: 5'- gACCUuccggcgUGCUGGCUUCGCGUucaCCAGCGa -3' miRNA: 3'- -UGGAu------GCGGCCGGAGUGUA---GGUCGUc -5' |
|||||||
23169 | 3' | -58.4 | NC_005178.1 | + | 23018 | 0.66 | 0.425941 |
Target: 5'- aACUUGCGCC-GCUUcCACAguggguuuUUCAGCAGg -3' miRNA: 3'- -UGGAUGCGGcCGGA-GUGU--------AGGUCGUC- -5' |
|||||||
23169 | 3' | -58.4 | NC_005178.1 | + | 23712 | 0.73 | 0.151765 |
Target: 5'- aACCUGCGaccuCGGCCUCG-AUCUGGCGGc -3' miRNA: 3'- -UGGAUGCg---GCCGGAGUgUAGGUCGUC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home