miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23169 5' -61.2 NC_005178.1 + 12790 0.66 0.263413
Target:  5'- cUCgGCaaUGGCCuuGAGGGCcgcGUGGUGGGUg -3'
miRNA:   3'- uAGgCG--ACCGG--CUCCUG---UACCGCCUA- -5'
23169 5' -61.2 NC_005178.1 + 21829 0.66 0.263413
Target:  5'- cUCUGC-GGCCGAGGcguuGCGcGGCGGc- -3'
miRNA:   3'- uAGGCGaCCGGCUCC----UGUaCCGCCua -5'
23169 5' -61.2 NC_005178.1 + 14700 0.66 0.263413
Target:  5'- -aCCGCcGGaUCGAuGGuCGUGGCGGGUu -3'
miRNA:   3'- uaGGCGaCC-GGCU-CCuGUACCGCCUA- -5'
23169 5' -61.2 NC_005178.1 + 16908 0.66 0.259367
Target:  5'- -gCC-CUGGCCGAggcauucccggauauGGACGacagcgcccUGGCGGAUg -3'
miRNA:   3'- uaGGcGACCGGCU---------------CCUGU---------ACCGCCUA- -5'
23169 5' -61.2 NC_005178.1 + 12049 0.66 0.256698
Target:  5'- cAUCCGCUGGUgGcuGcccGCGUGGCGGu- -3'
miRNA:   3'- -UAGGCGACCGgCucC---UGUACCGCCua -5'
23169 5' -61.2 NC_005178.1 + 26465 0.67 0.237393
Target:  5'- -gCUGCcGGCCGAGGugGauGCGGGa -3'
miRNA:   3'- uaGGCGaCCGGCUCCugUacCGCCUa -5'
23169 5' -61.2 NC_005178.1 + 28262 0.68 0.213559
Target:  5'- uUCUGCUuugcgaguucucGGCCGAgGGACAUGGUcGAUu -3'
miRNA:   3'- uAGGCGA------------CCGGCU-CCUGUACCGcCUA- -5'
23169 5' -61.2 NC_005178.1 + 24775 0.69 0.181681
Target:  5'- -aCUGCcGGUCGAGGACGUaGGCGcGGc -3'
miRNA:   3'- uaGGCGaCCGGCUCCUGUA-CCGC-CUa -5'
23169 5' -61.2 NC_005178.1 + 12911 0.69 0.172028
Target:  5'- -gUUGCUGGCCgguggugggcugGAGGACGUGGCGc-- -3'
miRNA:   3'- uaGGCGACCGG------------CUCCUGUACCGCcua -5'
23169 5' -61.2 NC_005178.1 + 17205 0.7 0.149461
Target:  5'- cAUCCGCgacgcccUGGUCGAuaaccuGGaACGUGGCGGAa -3'
miRNA:   3'- -UAGGCG-------ACCGGCU------CC-UGUACCGCCUa -5'
23169 5' -61.2 NC_005178.1 + 35697 1.04 0.000317
Target:  5'- uAUCCGCUGGCCGAGGACAUGGCGGAUg -3'
miRNA:   3'- -UAGGCGACCGGCUCCUGUACCGCCUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.