miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23185 5' -56.5 NC_005259.1 + 51662 0.66 0.730857
Target:  5'- uGCCGCGCGggCG-CGUCGGGcacGGg-- -3'
miRNA:   3'- -CGGUGCGCa-GCuGUAGCCCca-CCaac -5'
23185 5' -56.5 NC_005259.1 + 3248 0.66 0.720595
Target:  5'- cGUCAUGacgagGUCGGCAUCcugcucGGGUGGUUu -3'
miRNA:   3'- -CGGUGCg----CAGCUGUAGc-----CCCACCAAc -5'
23185 5' -56.5 NC_005259.1 + 16645 0.66 0.720595
Target:  5'- gGCgACGcCGcCGACAauuUCGGGGUGa--- -3'
miRNA:   3'- -CGgUGC-GCaGCUGU---AGCCCCACcaac -5'
23185 5' -56.5 NC_005259.1 + 42022 0.66 0.707133
Target:  5'- aUCACGCacgaggguugucggGUCGACugcgcuguccUCGGGGUGGgcGg -3'
miRNA:   3'- cGGUGCG--------------CAGCUGu---------AGCCCCACCaaC- -5'
23185 5' -56.5 NC_005259.1 + 5046 0.67 0.689358
Target:  5'- cGCCACGUugaucacgGUCGAgAUCGuGGGccgGGUc- -3'
miRNA:   3'- -CGGUGCG--------CAGCUgUAGC-CCCa--CCAac -5'
23185 5' -56.5 NC_005259.1 + 51398 0.67 0.689358
Target:  5'- cCCACGUGUUcACAUCGccgaGGGgccGGUUGa -3'
miRNA:   3'- cGGUGCGCAGcUGUAGC----CCCa--CCAAC- -5'
23185 5' -56.5 NC_005259.1 + 31509 0.67 0.645971
Target:  5'- aCCGCGCcg-GACuugcuugAUCGGGGUGGUg- -3'
miRNA:   3'- cGGUGCGcagCUG-------UAGCCCCACCAac -5'
23185 5' -56.5 NC_005259.1 + 29941 0.68 0.636398
Target:  5'- cGCCACGCGgcccggucgCGGCuggUGGGGcGGgcGg -3'
miRNA:   3'- -CGGUGCGCa--------GCUGua-GCCCCaCCaaC- -5'
23185 5' -56.5 NC_005259.1 + 33329 0.68 0.625758
Target:  5'- gGUCACGCGgaaGugAUCGGGGUcGa-- -3'
miRNA:   3'- -CGGUGCGCag-CugUAGCCCCAcCaac -5'
23185 5' -56.5 NC_005259.1 + 67406 0.68 0.604502
Target:  5'- uGUCACGgGcCGACAccaUCGGGGUGc--- -3'
miRNA:   3'- -CGGUGCgCaGCUGU---AGCCCCACcaac -5'
23185 5' -56.5 NC_005259.1 + 61877 0.69 0.583334
Target:  5'- uGCCGCGUGaucacgaccUCGAUAUCaGGGGUuaGGUc- -3'
miRNA:   3'- -CGGUGCGC---------AGCUGUAG-CCCCA--CCAac -5'
23185 5' -56.5 NC_005259.1 + 34715 0.7 0.489759
Target:  5'- uGCCGCGCGagCGccuCGUCGGGGaaaccguUGGUg- -3'
miRNA:   3'- -CGGUGCGCa-GCu--GUAGCCCC-------ACCAac -5'
23185 5' -56.5 NC_005259.1 + 36529 0.7 0.48086
Target:  5'- cCCGCGCGgugUGACAcgCGGGGUGa--- -3'
miRNA:   3'- cGGUGCGCa--GCUGUa-GCCCCACcaac -5'
23185 5' -56.5 NC_005259.1 + 55307 0.74 0.300323
Target:  5'- gGCCGCGUG-CGACGaccacaGGGGUGGUcuUGg -3'
miRNA:   3'- -CGGUGCGCaGCUGUag----CCCCACCA--AC- -5'
23185 5' -56.5 NC_005259.1 + 28229 0.83 0.076298
Target:  5'- cGCCAC-CGUCGGCggCGGGGUGGUc- -3'
miRNA:   3'- -CGGUGcGCAGCUGuaGCCCCACCAac -5'
23185 5' -56.5 NC_005259.1 + 68540 1.11 0.000871
Target:  5'- cGCCACGCGUCGACAUCGGGGUGGUUGa -3'
miRNA:   3'- -CGGUGCGCAGCUGUAGCCCCACCAAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.