miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23186 3' -56.9 NC_005259.1 + 158 0.66 0.727966
Target:  5'- gCUCGCCCgg-----CGGGGUCcGGCa -3'
miRNA:   3'- gGAGCGGGguauguaGCCCUAGcCCG- -5'
23186 3' -56.9 NC_005259.1 + 714 1.14 0.000542
Target:  5'- uCCUCGCCCCAUACAUCGGGAUCGGGCg -3'
miRNA:   3'- -GGAGCGGGGUAUGUAGCCCUAGCCCG- -5'
23186 3' -56.9 NC_005259.1 + 11226 0.67 0.665708
Target:  5'- --aCGCCgCAguccUCGGGcUCGGGCa -3'
miRNA:   3'- ggaGCGGgGUauguAGCCCuAGCCCG- -5'
23186 3' -56.9 NC_005259.1 + 11416 0.68 0.634055
Target:  5'- gCUCGUggCCgGUGCAaCGGGGaugcUUGGGCc -3'
miRNA:   3'- gGAGCG--GGgUAUGUaGCCCU----AGCCCG- -5'
23186 3' -56.9 NC_005259.1 + 12766 0.71 0.46039
Target:  5'- uCgUCGCCgCCGaccACGUUGGGAUCGgcGGCc -3'
miRNA:   3'- -GgAGCGG-GGUa--UGUAGCCCUAGC--CCG- -5'
23186 3' -56.9 NC_005259.1 + 12994 0.73 0.337321
Target:  5'- cCCUCGCCCUcacCAUcacccucgccgggCGGGAcuuccUCGGGCg -3'
miRNA:   3'- -GGAGCGGGGuauGUA-------------GCCCU-----AGCCCG- -5'
23186 3' -56.9 NC_005259.1 + 13119 0.76 0.229418
Target:  5'- gCCUCGCCCCG-ACcUCGGGGgucgcgcCGGGg -3'
miRNA:   3'- -GGAGCGGGGUaUGuAGCCCUa------GCCCg -5'
23186 3' -56.9 NC_005259.1 + 14224 0.69 0.570928
Target:  5'- cCCggcgCGCgUCGUGCGuaUCGGGc-CGGGCa -3'
miRNA:   3'- -GGa---GCGgGGUAUGU--AGCCCuaGCCCG- -5'
23186 3' -56.9 NC_005259.1 + 14671 0.75 0.2406
Target:  5'- aCCUCGgggCCAUcgggccaGCAUCGaGGGUCGGGCa -3'
miRNA:   3'- -GGAGCgg-GGUA-------UGUAGC-CCUAGCCCG- -5'
23186 3' -56.9 NC_005259.1 + 16162 0.7 0.483632
Target:  5'- uCCUCGaCacggaccccgagcugCCCGUACAcgguuUCGGGGucaagucacUCGGGCg -3'
miRNA:   3'- -GGAGC-G---------------GGGUAUGU-----AGCCCU---------AGCCCG- -5'
23186 3' -56.9 NC_005259.1 + 17483 0.72 0.405032
Target:  5'- aUCUCGacgcgcgugaCCUCGUGCA-CGGGGcCGGGCa -3'
miRNA:   3'- -GGAGC----------GGGGUAUGUaGCCCUaGCCCG- -5'
23186 3' -56.9 NC_005259.1 + 18107 0.68 0.635112
Target:  5'- gCCgUCGCgCUCAUcgacuacgagggcaACAUCGGcaaggccauggacgaGAUCGGGCu -3'
miRNA:   3'- -GG-AGCG-GGGUA--------------UGUAGCC---------------CUAGCCCG- -5'
23186 3' -56.9 NC_005259.1 + 23552 0.67 0.655173
Target:  5'- gCCUCGaCCgCA-ACAUCacaaGGAUCGaGGCg -3'
miRNA:   3'- -GGAGC-GGgGUaUGUAGc---CCUAGC-CCG- -5'
23186 3' -56.9 NC_005259.1 + 28858 0.68 0.62349
Target:  5'- --cCGCCCCAccgagggACGUUGGGc-CGGGUa -3'
miRNA:   3'- ggaGCGGGGUa------UGUAGCCCuaGCCCG- -5'
23186 3' -56.9 NC_005259.1 + 31923 0.69 0.550174
Target:  5'- aUCUCGUCaCGcAC-UCGGGGUCGaGGCg -3'
miRNA:   3'- -GGAGCGGgGUaUGuAGCCCUAGC-CCG- -5'
23186 3' -56.9 NC_005259.1 + 32558 0.67 0.64462
Target:  5'- --cCGCCCCGgcgaGCG-CGGGGauagcgUUGGGCa -3'
miRNA:   3'- ggaGCGGGGUa---UGUaGCCCU------AGCCCG- -5'
23186 3' -56.9 NC_005259.1 + 34884 0.68 0.62349
Target:  5'- aCCggggUGCCUCGgGCAggaCGGGccgcUCGGGCa -3'
miRNA:   3'- -GGa---GCGGGGUaUGUa--GCCCu---AGCCCG- -5'
23186 3' -56.9 NC_005259.1 + 45448 0.69 0.550174
Target:  5'- aUCUCGgUCC-UugAUCGGGGUgccgaaCGGGCc -3'
miRNA:   3'- -GGAGCgGGGuAugUAGCCCUA------GCCCG- -5'
23186 3' -56.9 NC_005259.1 + 45674 0.7 0.499435
Target:  5'- -gUCGCCgagCCGgauUACAUCGGGcUCGaGGCu -3'
miRNA:   3'- ggAGCGG---GGU---AUGUAGCCCuAGC-CCG- -5'
23186 3' -56.9 NC_005259.1 + 49340 0.7 0.496454
Target:  5'- gCCUCGggcagccgcuacauCCCCGgucAgGUCGGGAUCGaGCa -3'
miRNA:   3'- -GGAGC--------------GGGGUa--UgUAGCCCUAGCcCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.