Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23186 | 3' | -56.9 | NC_005259.1 | + | 158 | 0.66 | 0.727966 |
Target: 5'- gCUCGCCCgg-----CGGGGUCcGGCa -3' miRNA: 3'- gGAGCGGGguauguaGCCCUAGcCCG- -5' |
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23186 | 3' | -56.9 | NC_005259.1 | + | 714 | 1.14 | 0.000542 |
Target: 5'- uCCUCGCCCCAUACAUCGGGAUCGGGCg -3' miRNA: 3'- -GGAGCGGGGUAUGUAGCCCUAGCCCG- -5' |
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23186 | 3' | -56.9 | NC_005259.1 | + | 11226 | 0.67 | 0.665708 |
Target: 5'- --aCGCCgCAguccUCGGGcUCGGGCa -3' miRNA: 3'- ggaGCGGgGUauguAGCCCuAGCCCG- -5' |
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23186 | 3' | -56.9 | NC_005259.1 | + | 11416 | 0.68 | 0.634055 |
Target: 5'- gCUCGUggCCgGUGCAaCGGGGaugcUUGGGCc -3' miRNA: 3'- gGAGCG--GGgUAUGUaGCCCU----AGCCCG- -5' |
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23186 | 3' | -56.9 | NC_005259.1 | + | 12766 | 0.71 | 0.46039 |
Target: 5'- uCgUCGCCgCCGaccACGUUGGGAUCGgcGGCc -3' miRNA: 3'- -GgAGCGG-GGUa--UGUAGCCCUAGC--CCG- -5' |
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23186 | 3' | -56.9 | NC_005259.1 | + | 12994 | 0.73 | 0.337321 |
Target: 5'- cCCUCGCCCUcacCAUcacccucgccgggCGGGAcuuccUCGGGCg -3' miRNA: 3'- -GGAGCGGGGuauGUA-------------GCCCU-----AGCCCG- -5' |
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23186 | 3' | -56.9 | NC_005259.1 | + | 13119 | 0.76 | 0.229418 |
Target: 5'- gCCUCGCCCCG-ACcUCGGGGgucgcgcCGGGg -3' miRNA: 3'- -GGAGCGGGGUaUGuAGCCCUa------GCCCg -5' |
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23186 | 3' | -56.9 | NC_005259.1 | + | 14224 | 0.69 | 0.570928 |
Target: 5'- cCCggcgCGCgUCGUGCGuaUCGGGc-CGGGCa -3' miRNA: 3'- -GGa---GCGgGGUAUGU--AGCCCuaGCCCG- -5' |
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23186 | 3' | -56.9 | NC_005259.1 | + | 14671 | 0.75 | 0.2406 |
Target: 5'- aCCUCGgggCCAUcgggccaGCAUCGaGGGUCGGGCa -3' miRNA: 3'- -GGAGCgg-GGUA-------UGUAGC-CCUAGCCCG- -5' |
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23186 | 3' | -56.9 | NC_005259.1 | + | 16162 | 0.7 | 0.483632 |
Target: 5'- uCCUCGaCacggaccccgagcugCCCGUACAcgguuUCGGGGucaagucacUCGGGCg -3' miRNA: 3'- -GGAGC-G---------------GGGUAUGU-----AGCCCU---------AGCCCG- -5' |
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23186 | 3' | -56.9 | NC_005259.1 | + | 17483 | 0.72 | 0.405032 |
Target: 5'- aUCUCGacgcgcgugaCCUCGUGCA-CGGGGcCGGGCa -3' miRNA: 3'- -GGAGC----------GGGGUAUGUaGCCCUaGCCCG- -5' |
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23186 | 3' | -56.9 | NC_005259.1 | + | 18107 | 0.68 | 0.635112 |
Target: 5'- gCCgUCGCgCUCAUcgacuacgagggcaACAUCGGcaaggccauggacgaGAUCGGGCu -3' miRNA: 3'- -GG-AGCG-GGGUA--------------UGUAGCC---------------CUAGCCCG- -5' |
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23186 | 3' | -56.9 | NC_005259.1 | + | 23552 | 0.67 | 0.655173 |
Target: 5'- gCCUCGaCCgCA-ACAUCacaaGGAUCGaGGCg -3' miRNA: 3'- -GGAGC-GGgGUaUGUAGc---CCUAGC-CCG- -5' |
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23186 | 3' | -56.9 | NC_005259.1 | + | 28858 | 0.68 | 0.62349 |
Target: 5'- --cCGCCCCAccgagggACGUUGGGc-CGGGUa -3' miRNA: 3'- ggaGCGGGGUa------UGUAGCCCuaGCCCG- -5' |
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23186 | 3' | -56.9 | NC_005259.1 | + | 31923 | 0.69 | 0.550174 |
Target: 5'- aUCUCGUCaCGcAC-UCGGGGUCGaGGCg -3' miRNA: 3'- -GGAGCGGgGUaUGuAGCCCUAGC-CCG- -5' |
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23186 | 3' | -56.9 | NC_005259.1 | + | 32558 | 0.67 | 0.64462 |
Target: 5'- --cCGCCCCGgcgaGCG-CGGGGauagcgUUGGGCa -3' miRNA: 3'- ggaGCGGGGUa---UGUaGCCCU------AGCCCG- -5' |
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23186 | 3' | -56.9 | NC_005259.1 | + | 34884 | 0.68 | 0.62349 |
Target: 5'- aCCggggUGCCUCGgGCAggaCGGGccgcUCGGGCa -3' miRNA: 3'- -GGa---GCGGGGUaUGUa--GCCCu---AGCCCG- -5' |
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23186 | 3' | -56.9 | NC_005259.1 | + | 45448 | 0.69 | 0.550174 |
Target: 5'- aUCUCGgUCC-UugAUCGGGGUgccgaaCGGGCc -3' miRNA: 3'- -GGAGCgGGGuAugUAGCCCUA------GCCCG- -5' |
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23186 | 3' | -56.9 | NC_005259.1 | + | 45674 | 0.7 | 0.499435 |
Target: 5'- -gUCGCCgagCCGgauUACAUCGGGcUCGaGGCu -3' miRNA: 3'- ggAGCGG---GGU---AUGUAGCCCuAGC-CCG- -5' |
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23186 | 3' | -56.9 | NC_005259.1 | + | 49340 | 0.7 | 0.496454 |
Target: 5'- gCCUCGggcagccgcuacauCCCCGgucAgGUCGGGAUCGaGCa -3' miRNA: 3'- -GGAGC--------------GGGGUa--UgUAGCCCUAGCcCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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