miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23187 5' -51.3 NC_005259.1 + 65847 0.66 0.929125
Target:  5'- -cGUGGgacua--CACGGUGAUGCCCg -3'
miRNA:   3'- uuUACCacagcacGUGCUACUACGGG- -5'
23187 5' -51.3 NC_005259.1 + 62337 0.68 0.857746
Target:  5'- ---gGGUGUcCGUgacGCGCGAgc-UGCCCg -3'
miRNA:   3'- uuuaCCACA-GCA---CGUGCUacuACGGG- -5'
23187 5' -51.3 NC_005259.1 + 43063 0.67 0.903904
Target:  5'- ---cGGUGa-GcGCACGccGGUGCCCg -3'
miRNA:   3'- uuuaCCACagCaCGUGCuaCUACGGG- -5'
23187 5' -51.3 NC_005259.1 + 41603 0.68 0.849151
Target:  5'- ---cGGUGUCGgcaGCgGCGGcagcucGGUGCCCg -3'
miRNA:   3'- uuuaCCACAGCa--CG-UGCUa-----CUACGGG- -5'
23187 5' -51.3 NC_005259.1 + 35289 0.67 0.889594
Target:  5'- ---cGGUGgaCGgauucUGCGCGAUGAUGUCg -3'
miRNA:   3'- uuuaCCACa-GC-----ACGUGCUACUACGGg -5'
23187 5' -51.3 NC_005259.1 + 31496 0.68 0.831257
Target:  5'- ---cGGUGa---GCACGAUGcUGCCCg -3'
miRNA:   3'- uuuaCCACagcaCGUGCUACuACGGG- -5'
23187 5' -51.3 NC_005259.1 + 30052 0.68 0.866917
Target:  5'- ---cGGUGcCGcugccgccgagagccUGCACGAUGGcaucgcggauacccUGCCCa -3'
miRNA:   3'- uuuaCCACaGC---------------ACGUGCUACU--------------ACGGG- -5'
23187 5' -51.3 NC_005259.1 + 28182 0.69 0.812491
Target:  5'- ---cGGgGUCGacgcGCACGAugggccgcguguUGAUGCCCu -3'
miRNA:   3'- uuuaCCaCAGCa---CGUGCU------------ACUACGGG- -5'
23187 5' -51.3 NC_005259.1 + 12617 0.66 0.910639
Target:  5'- ---cGGgccgcGUCG-GCugaucgucuCGAUGGUGCCCg -3'
miRNA:   3'- uuuaCCa----CAGCaCGu--------GCUACUACGGG- -5'
23187 5' -51.3 NC_005259.1 + 2296 1.11 0.002211
Target:  5'- aAAAUGGUGUCGUGCACGAUGAUGCCCg -3'
miRNA:   3'- -UUUACCACAGCACGUGCUACUACGGG- -5'
23187 5' -51.3 NC_005259.1 + 1837 0.76 0.39865
Target:  5'- cGAUGGUGgCGgccaUGCcgcCGAUGAUGCCCg -3'
miRNA:   3'- uUUACCACaGC----ACGu--GCUACUACGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.