Results 1 - 20 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23188 | 5' | -57.7 | NC_005259.1 | + | 2602 | 1 | 0.003194 |
Target: 5'- uGGGCAACCGCGACAUCCCACAGaCCAu -3' miRNA: 3'- -CCCGUUGGCGCUGUAGGGUGUC-GGUu -5' |
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23188 | 5' | -57.7 | NC_005259.1 | + | 49336 | 0.83 | 0.049071 |
Target: 5'- cGGGCAGCCGCuACAUCCC-CGGUCAGg -3' miRNA: 3'- -CCCGUUGGCGcUGUAGGGuGUCGGUU- -5' |
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23188 | 5' | -57.7 | NC_005259.1 | + | 45253 | 0.74 | 0.222976 |
Target: 5'- cGGCGACCcCGACGcCCCGCAGaCCGg -3' miRNA: 3'- cCCGUUGGcGCUGUaGGGUGUC-GGUu -5' |
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23188 | 5' | -57.7 | NC_005259.1 | + | 68774 | 0.72 | 0.301373 |
Target: 5'- cGGGCAguGCUacgcaGCGAC-UCCgCGCAGCCAc -3' miRNA: 3'- -CCCGU--UGG-----CGCUGuAGG-GUGUCGGUu -5' |
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23188 | 5' | -57.7 | NC_005259.1 | + | 61106 | 0.71 | 0.316339 |
Target: 5'- cGGGCAGCCGcCGAUAgcgCaCCACcuuGCCGc -3' miRNA: 3'- -CCCGUUGGC-GCUGUa--G-GGUGu--CGGUu -5' |
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23188 | 5' | -57.7 | NC_005259.1 | + | 19083 | 0.71 | 0.331858 |
Target: 5'- cGGGguGCCagaccgauuuGCGgaACAUCUCGCGGCCAu -3' miRNA: 3'- -CCCguUGG----------CGC--UGUAGGGUGUCGGUu -5' |
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23188 | 5' | -57.7 | NC_005259.1 | + | 8456 | 0.7 | 0.39049 |
Target: 5'- -cGCAGCCGCucgucGGCAUgCCCGguGCCGAc -3' miRNA: 3'- ccCGUUGGCG-----CUGUA-GGGUguCGGUU- -5' |
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23188 | 5' | -57.7 | NC_005259.1 | + | 62756 | 0.7 | 0.39049 |
Target: 5'- uGGGCGAgUGgguCGAUAUCCCGCAccGCCGc -3' miRNA: 3'- -CCCGUUgGC---GCUGUAGGGUGU--CGGUu -5' |
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23188 | 5' | -57.7 | NC_005259.1 | + | 52425 | 0.7 | 0.39049 |
Target: 5'- cGGGCAgaucGCCGagGACAUcgCCCGCgaGGCCAu -3' miRNA: 3'- -CCCGU----UGGCg-CUGUA--GGGUG--UCGGUu -5' |
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23188 | 5' | -57.7 | NC_005259.1 | + | 41597 | 0.69 | 0.436311 |
Target: 5'- cGGCAGCgGCGGCAgCUCGguGCCc- -3' miRNA: 3'- cCCGUUGgCGCUGUaGGGUguCGGuu -5' |
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23188 | 5' | -57.7 | NC_005259.1 | + | 64073 | 0.69 | 0.436311 |
Target: 5'- aGGGC-ACCGCGugAUCgUcCGGCCc- -3' miRNA: 3'- -CCCGuUGGCGCugUAGgGuGUCGGuu -5' |
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23188 | 5' | -57.7 | NC_005259.1 | + | 59862 | 0.69 | 0.440109 |
Target: 5'- cGGGCAGCCgugcucgugcccgucGaCGGCAUgCCggugGCAGCCGAu -3' miRNA: 3'- -CCCGUUGG---------------C-GCUGUAgGG----UGUCGGUU- -5' |
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23188 | 5' | -57.7 | NC_005259.1 | + | 5568 | 0.69 | 0.455488 |
Target: 5'- -aGCAGCCGCucgggcgaGACAUcgaggCCCAUGGCCAAc -3' miRNA: 3'- ccCGUUGGCG--------CUGUA-----GGGUGUCGGUU- -5' |
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23188 | 5' | -57.7 | NC_005259.1 | + | 26572 | 0.68 | 0.47214 |
Target: 5'- cGGCAGCCGaaacacagcguguuCGGCGUCCaACAGUCGc -3' miRNA: 3'- cCCGUUGGC--------------GCUGUAGGgUGUCGGUu -5' |
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23188 | 5' | -57.7 | NC_005259.1 | + | 16891 | 0.68 | 0.47511 |
Target: 5'- cGGCAACCugaGCGGCAaucUCCgCACcGCCGu -3' miRNA: 3'- cCCGUUGG---CGCUGU---AGG-GUGuCGGUu -5' |
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23188 | 5' | -57.7 | NC_005259.1 | + | 63284 | 0.68 | 0.485079 |
Target: 5'- aGGCcagcgccgGACgGCGGCcauUCUCGCGGCCAAg -3' miRNA: 3'- cCCG--------UUGgCGCUGu--AGGGUGUCGGUU- -5' |
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23188 | 5' | -57.7 | NC_005259.1 | + | 1735 | 0.68 | 0.485079 |
Target: 5'- cGGGCAGCCGUGucGCGUCaaaCCACuucuGCUGGa -3' miRNA: 3'- -CCCGUUGGCGC--UGUAG---GGUGu---CGGUU- -5' |
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23188 | 5' | -57.7 | NC_005259.1 | + | 17838 | 0.68 | 0.515556 |
Target: 5'- cGGGuUGACCGUGGCGagCCACAGaUCGAu -3' miRNA: 3'- -CCC-GUUGGCGCUGUagGGUGUC-GGUU- -5' |
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23188 | 5' | -57.7 | NC_005259.1 | + | 25120 | 0.68 | 0.515556 |
Target: 5'- cGGCAgcguuGCCGcCGACAUugCCCGC-GCCGg -3' miRNA: 3'- cCCGU-----UGGC-GCUGUA--GGGUGuCGGUu -5' |
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23188 | 5' | -57.7 | NC_005259.1 | + | 17452 | 0.67 | 0.535254 |
Target: 5'- cGGGCAAgUGCacGACGuuggggccaacgaUCCgGCAGCCGGu -3' miRNA: 3'- -CCCGUUgGCG--CUGU-------------AGGgUGUCGGUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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