miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23188 5' -57.7 NC_005259.1 + 1255 0.66 0.589272
Target:  5'- cGGCGGCCacuaGGCcgCCC-CGGCCAc -3'
miRNA:   3'- cCCGUUGGcg--CUGuaGGGuGUCGGUu -5'
23188 5' -57.7 NC_005259.1 + 1735 0.68 0.485079
Target:  5'- cGGGCAGCCGUGucGCGUCaaaCCACuucuGCUGGa -3'
miRNA:   3'- -CCCGUUGGCGC--UGUAG---GGUGu---CGGUU- -5'
23188 5' -57.7 NC_005259.1 + 2602 1 0.003194
Target:  5'- uGGGCAACCGCGACAUCCCACAGaCCAu -3'
miRNA:   3'- -CCCGUUGGCGCUGUAGGGUGUC-GGUu -5'
23188 5' -57.7 NC_005259.1 + 5568 0.69 0.455488
Target:  5'- -aGCAGCCGCucgggcgaGACAUcgaggCCCAUGGCCAAc -3'
miRNA:   3'- ccCGUUGGCG--------CUGUA-----GGGUGUCGGUU- -5'
23188 5' -57.7 NC_005259.1 + 7053 0.67 0.536298
Target:  5'- cGGguGCCGgGGCca-CCGCAGCCu- -3'
miRNA:   3'- cCCguUGGCgCUGuagGGUGUCGGuu -5'
23188 5' -57.7 NC_005259.1 + 8221 0.66 0.607528
Target:  5'- uGGGCugcgcgaacagaucAGCCGCGuACA-CCCGaGGCCGGa -3'
miRNA:   3'- -CCCG--------------UUGGCGC-UGUaGGGUgUCGGUU- -5'
23188 5' -57.7 NC_005259.1 + 8456 0.7 0.39049
Target:  5'- -cGCAGCCGCucgucGGCAUgCCCGguGCCGAc -3'
miRNA:   3'- ccCGUUGGCG-----CUGUA-GGGUguCGGUU- -5'
23188 5' -57.7 NC_005259.1 + 13627 0.66 0.600001
Target:  5'- cGGCAGCCGUGAuCAgugCCCACGuuuCCu- -3'
miRNA:   3'- cCCGUUGGCGCU-GUa--GGGUGUc--GGuu -5'
23188 5' -57.7 NC_005259.1 + 16891 0.68 0.47511
Target:  5'- cGGCAACCugaGCGGCAaucUCCgCACcGCCGu -3'
miRNA:   3'- cCCGUUGG---CGCUGU---AGG-GUGuCGGUu -5'
23188 5' -57.7 NC_005259.1 + 17452 0.67 0.535254
Target:  5'- cGGGCAAgUGCacGACGuuggggccaacgaUCCgGCAGCCGGu -3'
miRNA:   3'- -CCCGUUgGCG--CUGU-------------AGGgUGUCGGUU- -5'
23188 5' -57.7 NC_005259.1 + 17838 0.68 0.515556
Target:  5'- cGGGuUGACCGUGGCGagCCACAGaUCGAu -3'
miRNA:   3'- -CCC-GUUGGCGCUGUagGGUGUC-GGUU- -5'
23188 5' -57.7 NC_005259.1 + 19083 0.71 0.331858
Target:  5'- cGGGguGCCagaccgauuuGCGgaACAUCUCGCGGCCAu -3'
miRNA:   3'- -CCCguUGG----------CGC--UGUAGGGUGUCGGUu -5'
23188 5' -57.7 NC_005259.1 + 19363 0.67 0.578577
Target:  5'- cGGCAGCCGCGuCGgcgaUgGCGGCCu- -3'
miRNA:   3'- cCCGUUGGCGCuGUag--GgUGUCGGuu -5'
23188 5' -57.7 NC_005259.1 + 21036 0.67 0.567925
Target:  5'- uGGCcGCCGCG-CcgCCCGCGaauauGCCGGg -3'
miRNA:   3'- cCCGuUGGCGCuGuaGGGUGU-----CGGUU- -5'
23188 5' -57.7 NC_005259.1 + 22703 0.67 0.536298
Target:  5'- gGGGCcGCCGUGGCugcguugUUCGCGGCCc- -3'
miRNA:   3'- -CCCGuUGGCGCUGua-----GGGUGUCGGuu -5'
23188 5' -57.7 NC_005259.1 + 25120 0.68 0.515556
Target:  5'- cGGCAgcguuGCCGcCGACAUugCCCGC-GCCGg -3'
miRNA:   3'- cCCGU-----UGGC-GCUGUA--GGGUGuCGGUu -5'
23188 5' -57.7 NC_005259.1 + 25735 0.66 0.610757
Target:  5'- cGGGUgccugagaguuGACCGCaGCG-CCCGCcGCCGAc -3'
miRNA:   3'- -CCCG-----------UUGGCGcUGUaGGGUGuCGGUU- -5'
23188 5' -57.7 NC_005259.1 + 26572 0.68 0.47214
Target:  5'- cGGCAGCCGaaacacagcguguuCGGCGUCCaACAGUCGc -3'
miRNA:   3'- cCCGUUGGC--------------GCUGUAGGgUGUCGGUu -5'
23188 5' -57.7 NC_005259.1 + 28942 0.66 0.589272
Target:  5'- cGGGuCggUCGCGAUGaCCCAUGGgCCGAc -3'
miRNA:   3'- -CCC-GuuGGCGCUGUaGGGUGUC-GGUU- -5'
23188 5' -57.7 NC_005259.1 + 32866 0.67 0.567925
Target:  5'- uGGGCcGCCGgGcugucCGUCgCCAUGGCCAc -3'
miRNA:   3'- -CCCGuUGGCgCu----GUAG-GGUGUCGGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.