miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23189 3' -57.9 NC_005259.1 + 23821 0.66 0.610757
Target:  5'- uUGCGCGCC-GA-GGU-CAGCGCGg- -3'
miRNA:   3'- cACGUGCGGaCUaCCAcGUCGCGUgc -5'
23189 3' -57.9 NC_005259.1 + 207 0.66 0.600001
Target:  5'- -cGUACGCCggGgcGGUGuCGGUGCcCGg -3'
miRNA:   3'- caCGUGCGGa-CuaCCAC-GUCGCGuGC- -5'
23189 3' -57.9 NC_005259.1 + 53803 0.66 0.578577
Target:  5'- cGUGCAcCGCaUGAUGcUGUGGCGCuCGg -3'
miRNA:   3'- -CACGU-GCGgACUACcACGUCGCGuGC- -5'
23189 3' -57.9 NC_005259.1 + 33796 0.66 0.578577
Target:  5'- cGUGC-CGCCUGAg---GCGGCGaggaACGu -3'
miRNA:   3'- -CACGuGCGGACUaccaCGUCGCg---UGC- -5'
23189 3' -57.9 NC_005259.1 + 52693 0.67 0.536298
Target:  5'- cGUGCACGUgUGAUGuGgGCGGauacugcccgaUGCACGg -3'
miRNA:   3'- -CACGUGCGgACUAC-CaCGUC-----------GCGUGC- -5'
23189 3' -57.9 NC_005259.1 + 23377 0.67 0.525889
Target:  5'- aUGCcCGCCggGccGG-GCAGCGCGCc -3'
miRNA:   3'- cACGuGCGGa-CuaCCaCGUCGCGUGc -5'
23189 3' -57.9 NC_005259.1 + 2315 0.68 0.47511
Target:  5'- cGUGC-CGCCcaUGAggucgaaaaUGGUGUcGUGCACGa -3'
miRNA:   3'- -CACGuGCGG--ACU---------ACCACGuCGCGUGC- -5'
23189 3' -57.9 NC_005259.1 + 47766 0.69 0.436311
Target:  5'- -aGUACGCCUcg----GCAGCGCGCGg -3'
miRNA:   3'- caCGUGCGGAcuaccaCGUCGCGUGC- -5'
23189 3' -57.9 NC_005259.1 + 27597 0.69 0.436311
Target:  5'- -gGCGCGCCgcucggGGUGCccacgauGUGCACGg -3'
miRNA:   3'- caCGUGCGGacua--CCACGu------CGCGUGC- -5'
23189 3' -57.9 NC_005259.1 + 44735 0.69 0.430649
Target:  5'- cGUGCACGCguggcuggaagcgcuCgaccucggGAUGGUGCuGCuGCGCGa -3'
miRNA:   3'- -CACGUGCG---------------Ga-------CUACCACGuCG-CGUGC- -5'
23189 3' -57.9 NC_005259.1 + 24589 0.7 0.373063
Target:  5'- gGUGCcCGCCUGAccG-GCAGCGC-CGa -3'
miRNA:   3'- -CACGuGCGGACUacCaCGUCGCGuGC- -5'
23189 3' -57.9 NC_005259.1 + 46847 0.7 0.347929
Target:  5'- cGUGCGCGCCgaaAUGGaUGaccaCAGCGCGCc -3'
miRNA:   3'- -CACGUGCGGac-UACC-AC----GUCGCGUGc -5'
23189 3' -57.9 NC_005259.1 + 59178 0.74 0.217293
Target:  5'- -cGCAcCGCCg---GGUGCGGCGCugGc -3'
miRNA:   3'- caCGU-GCGGacuaCCACGUCGCGugC- -5'
23189 3' -57.9 NC_005259.1 + 2914 1.08 0.000783
Target:  5'- aGUGCACGCCUGAUGGUGCAGCGCACGc -3'
miRNA:   3'- -CACGUGCGGACUACCACGUCGCGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.