miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23189 5' -57.9 NC_005259.1 + 25971 0.66 0.619602
Target:  5'- gAUGC-CGcCGAGCAGGCCGcCGaGCa -3'
miRNA:   3'- aUGCGcGCaGCUCGUCCGGUaGUcUG- -5'
23189 5' -57.9 NC_005259.1 + 27869 0.66 0.619602
Target:  5'- gUGCcCGCGUCGcGCA-GCC-UCAGGCc -3'
miRNA:   3'- -AUGcGCGCAGCuCGUcCGGuAGUCUG- -5'
23189 5' -57.9 NC_005259.1 + 38128 0.66 0.608823
Target:  5'- -uCGC-CGUCGAGCaAGGUC-UCAuGACg -3'
miRNA:   3'- auGCGcGCAGCUCG-UCCGGuAGU-CUG- -5'
23189 5' -57.9 NC_005259.1 + 5149 0.66 0.608823
Target:  5'- --aGCGCGUaccggCGAGguGGCCggCuGGCc -3'
miRNA:   3'- augCGCGCA-----GCUCguCCGGuaGuCUG- -5'
23189 5' -57.9 NC_005259.1 + 33383 0.66 0.598064
Target:  5'- cACGCuGCGUCGAGUAGu---UCGGGCc -3'
miRNA:   3'- aUGCG-CGCAGCUCGUCcgguAGUCUG- -5'
23189 5' -57.9 NC_005259.1 + 9883 0.66 0.587333
Target:  5'- cACGCGCGgcaUCGAGCAGaG-CGUCGaGCu -3'
miRNA:   3'- aUGCGCGC---AGCUCGUC-CgGUAGUcUG- -5'
23189 5' -57.9 NC_005259.1 + 10061 0.66 0.586262
Target:  5'- gGCGCgguggcaGCGUCG-GCcuuGGCCAgcaggUCGGGCa -3'
miRNA:   3'- aUGCG-------CGCAGCuCGu--CCGGU-----AGUCUG- -5'
23189 5' -57.9 NC_005259.1 + 34113 0.67 0.565987
Target:  5'- gGgGUGCcUCGGGCaggacGGGCCGcUCGGGCa -3'
miRNA:   3'- aUgCGCGcAGCUCG-----UCCGGU-AGUCUG- -5'
23189 5' -57.9 NC_005259.1 + 27520 0.67 0.543796
Target:  5'- gACGC-CGUCGAGCAcgaccucggcgguGGCgGgCAGACc -3'
miRNA:   3'- aUGCGcGCAGCUCGU-------------CCGgUaGUCUG- -5'
23189 5' -57.9 NC_005259.1 + 23918 0.67 0.534371
Target:  5'- gUugGUGCuGUCGAGCGuGCCcguguagccgGUCGGGCc -3'
miRNA:   3'- -AugCGCG-CAGCUCGUcCGG----------UAGUCUG- -5'
23189 5' -57.9 NC_005259.1 + 58252 0.67 0.510562
Target:  5'- cGCGCuGCcgggcgaucaucauGUCGGGCGGGUCAUCgagguGGGCc -3'
miRNA:   3'- aUGCG-CG--------------CAGCUCGUCCGGUAG-----UCUG- -5'
23189 5' -57.9 NC_005259.1 + 11548 0.68 0.503402
Target:  5'- gUugGUGCGaCGcugcGGCAGGCCGguggcacCGGACa -3'
miRNA:   3'- -AugCGCGCaGC----UCGUCCGGUa------GUCUG- -5'
23189 5' -57.9 NC_005259.1 + 6155 0.68 0.483196
Target:  5'- aGCGCGCGguugaCGAGCAG-CCGcUCGGcGCg -3'
miRNA:   3'- aUGCGCGCa----GCUCGUCcGGU-AGUC-UG- -5'
23189 5' -57.9 NC_005259.1 + 36811 0.68 0.483196
Target:  5'- cUGCGCGCcUCGGucuGCGacuuGGCC-UCAGACa -3'
miRNA:   3'- -AUGCGCGcAGCU---CGU----CCGGuAGUCUG- -5'
23189 5' -57.9 NC_005259.1 + 2767 0.68 0.483196
Target:  5'- cACGCG-GUCGuGCA-GCCAUC-GACg -3'
miRNA:   3'- aUGCGCgCAGCuCGUcCGGUAGuCUG- -5'
23189 5' -57.9 NC_005259.1 + 22045 0.68 0.473239
Target:  5'- gAC-CGCGUUGAGCuuguuGGCCAcgccgccgaugaUCGGGCc -3'
miRNA:   3'- aUGcGCGCAGCUCGu----CCGGU------------AGUCUG- -5'
23189 5' -57.9 NC_005259.1 + 59104 0.69 0.434497
Target:  5'- cGCGCGCGaCGAGCuuucGGCCcUCGcGCu -3'
miRNA:   3'- aUGCGCGCaGCUCGu---CCGGuAGUcUG- -5'
23189 5' -57.9 NC_005259.1 + 27627 0.69 0.425101
Target:  5'- aGCGUGCgGUCGAGCuuGGCCGguaccCAuGGCg -3'
miRNA:   3'- aUGCGCG-CAGCUCGu-CCGGUa----GU-CUG- -5'
23189 5' -57.9 NC_005259.1 + 58750 0.69 0.397657
Target:  5'- gGCG-GUGUgcuugaUGAGCGGGCCGgucUCAGGCa -3'
miRNA:   3'- aUGCgCGCA------GCUCGUCCGGU---AGUCUG- -5'
23189 5' -57.9 NC_005259.1 + 15381 0.69 0.397657
Target:  5'- --aGCagGCGUCGAGCGGuGCCGUUGGcCg -3'
miRNA:   3'- augCG--CGCAGCUCGUC-CGGUAGUCuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.