Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23189 | 5' | -57.9 | NC_005259.1 | + | 64789 | 0.72 | 0.299885 |
Target: 5'- cACGCucauCGagaUCGAGCAGGCCAagCAGGCc -3' miRNA: 3'- aUGCGc---GC---AGCUCGUCCGGUa-GUCUG- -5' |
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23189 | 5' | -57.9 | NC_005259.1 | + | 62436 | 0.7 | 0.346307 |
Target: 5'- -gUGCGCGgCGuGuCAGGCCGccUCGGACa -3' miRNA: 3'- auGCGCGCaGCuC-GUCCGGU--AGUCUG- -5' |
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23189 | 5' | -57.9 | NC_005259.1 | + | 59481 | 0.71 | 0.338225 |
Target: 5'- cGCGCGCGUCGAccGCcgccGGGUCAcCGGAg -3' miRNA: 3'- aUGCGCGCAGCU--CG----UCCGGUaGUCUg -5' |
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23189 | 5' | -57.9 | NC_005259.1 | + | 59104 | 0.69 | 0.434497 |
Target: 5'- cGCGCGCGaCGAGCuuucGGCCcUCGcGCu -3' miRNA: 3'- aUGCGCGCaGCUCGu---CCGGuAGUcUG- -5' |
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23189 | 5' | -57.9 | NC_005259.1 | + | 58750 | 0.69 | 0.397657 |
Target: 5'- gGCG-GUGUgcuugaUGAGCGGGCCGgucUCAGGCa -3' miRNA: 3'- aUGCgCGCA------GCUCGUCCGGU---AGUCUG- -5' |
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23189 | 5' | -57.9 | NC_005259.1 | + | 58252 | 0.67 | 0.510562 |
Target: 5'- cGCGCuGCcgggcgaucaucauGUCGGGCGGGUCAUCgagguGGGCc -3' miRNA: 3'- aUGCG-CG--------------CAGCUCGUCCGGUAG-----UCUG- -5' |
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23189 | 5' | -57.9 | NC_005259.1 | + | 54773 | 0.73 | 0.239507 |
Target: 5'- gGCGCGCGUCGuGCguaucGGGCCGggCAacGACg -3' miRNA: 3'- aUGCGCGCAGCuCG-----UCCGGUa-GU--CUG- -5' |
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23189 | 5' | -57.9 | NC_005259.1 | + | 38716 | 0.71 | 0.307276 |
Target: 5'- --aGCaGCGUCGAGCucuacgguGGCCcAUUAGACg -3' miRNA: 3'- augCG-CGCAGCUCGu-------CCGG-UAGUCUG- -5' |
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23189 | 5' | -57.9 | NC_005259.1 | + | 38128 | 0.66 | 0.608823 |
Target: 5'- -uCGC-CGUCGAGCaAGGUC-UCAuGACg -3' miRNA: 3'- auGCGcGCAGCUCG-UCCGGuAGU-CUG- -5' |
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23189 | 5' | -57.9 | NC_005259.1 | + | 38100 | 0.75 | 0.188133 |
Target: 5'- aACGCGagGUgugccgguugagcgUGAGCAGGCCAUCGGAa -3' miRNA: 3'- aUGCGCg-CA--------------GCUCGUCCGGUAGUCUg -5' |
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23189 | 5' | -57.9 | NC_005259.1 | + | 36811 | 0.68 | 0.483196 |
Target: 5'- cUGCGCGCcUCGGucuGCGacuuGGCC-UCAGACa -3' miRNA: 3'- -AUGCGCGcAGCU---CGU----CCGGuAGUCUG- -5' |
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23189 | 5' | -57.9 | NC_005259.1 | + | 34113 | 0.67 | 0.565987 |
Target: 5'- gGgGUGCcUCGGGCaggacGGGCCGcUCGGGCa -3' miRNA: 3'- aUgCGCGcAGCUCG-----UCCGGU-AGUCUG- -5' |
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23189 | 5' | -57.9 | NC_005259.1 | + | 33383 | 0.66 | 0.598064 |
Target: 5'- cACGCuGCGUCGAGUAGu---UCGGGCc -3' miRNA: 3'- aUGCG-CGCAGCUCGUCcgguAGUCUG- -5' |
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23189 | 5' | -57.9 | NC_005259.1 | + | 32752 | 0.71 | 0.314805 |
Target: 5'- aGCGCcuGCGUCG-GCAGcGCCAcgcCGGACa -3' miRNA: 3'- aUGCG--CGCAGCuCGUC-CGGUa--GUCUG- -5' |
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23189 | 5' | -57.9 | NC_005259.1 | + | 27869 | 0.66 | 0.619602 |
Target: 5'- gUGCcCGCGUCGcGCA-GCC-UCAGGCc -3' miRNA: 3'- -AUGcGCGCAGCuCGUcCGGuAGUCUG- -5' |
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23189 | 5' | -57.9 | NC_005259.1 | + | 27687 | 0.71 | 0.307276 |
Target: 5'- aGCGCGagGUCGAccucgaaaaggGCGGuGCCGUCGGAUa -3' miRNA: 3'- aUGCGCg-CAGCU-----------CGUC-CGGUAGUCUG- -5' |
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23189 | 5' | -57.9 | NC_005259.1 | + | 27627 | 0.69 | 0.425101 |
Target: 5'- aGCGUGCgGUCGAGCuuGGCCGguaccCAuGGCg -3' miRNA: 3'- aUGCGCG-CAGCUCGu-CCGGUa----GU-CUG- -5' |
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23189 | 5' | -57.9 | NC_005259.1 | + | 27520 | 0.67 | 0.543796 |
Target: 5'- gACGC-CGUCGAGCAcgaccucggcgguGGCgGgCAGACc -3' miRNA: 3'- aUGCGcGCAGCUCGU-------------CCGgUaGUCUG- -5' |
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23189 | 5' | -57.9 | NC_005259.1 | + | 25971 | 0.66 | 0.619602 |
Target: 5'- gAUGC-CGcCGAGCAGGCCGcCGaGCa -3' miRNA: 3'- aUGCGcGCaGCUCGUCCGGUaGUcUG- -5' |
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23189 | 5' | -57.9 | NC_005259.1 | + | 24846 | 0.71 | 0.307276 |
Target: 5'- aACGUGCgGUCGAGCAGcgcGCCgguGUCGGAg -3' miRNA: 3'- aUGCGCG-CAGCUCGUC---CGG---UAGUCUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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