miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23189 5' -57.9 NC_005259.1 + 25971 0.66 0.619602
Target:  5'- gAUGC-CGcCGAGCAGGCCGcCGaGCa -3'
miRNA:   3'- aUGCGcGCaGCUCGUCCGGUaGUcUG- -5'
23189 5' -57.9 NC_005259.1 + 62436 0.7 0.346307
Target:  5'- -gUGCGCGgCGuGuCAGGCCGccUCGGACa -3'
miRNA:   3'- auGCGCGCaGCuC-GUCCGGU--AGUCUG- -5'
23189 5' -57.9 NC_005259.1 + 18840 0.7 0.371378
Target:  5'- gGCGCGUGagCGAGCGGuggaauGCCcgCAGAUg -3'
miRNA:   3'- aUGCGCGCa-GCUCGUC------CGGuaGUCUG- -5'
23189 5' -57.9 NC_005259.1 + 58750 0.69 0.397657
Target:  5'- gGCG-GUGUgcuugaUGAGCGGGCCGgucUCAGGCa -3'
miRNA:   3'- aUGCgCGCA------GCUCGUCCGGU---AGUCUG- -5'
23189 5' -57.9 NC_005259.1 + 15381 0.69 0.397657
Target:  5'- --aGCagGCGUCGAGCGGuGCCGUUGGcCg -3'
miRNA:   3'- augCG--CGCAGCUCGUC-CGGUAGUCuG- -5'
23189 5' -57.9 NC_005259.1 + 27627 0.69 0.425101
Target:  5'- aGCGUGCgGUCGAGCuuGGCCGguaccCAuGGCg -3'
miRNA:   3'- aUGCGCG-CAGCUCGu-CCGGUa----GU-CUG- -5'
23189 5' -57.9 NC_005259.1 + 59104 0.69 0.434497
Target:  5'- cGCGCGCGaCGAGCuuucGGCCcUCGcGCu -3'
miRNA:   3'- aUGCGCGCaGCUCGu---CCGGuAGUcUG- -5'
23189 5' -57.9 NC_005259.1 + 22045 0.68 0.473239
Target:  5'- gAC-CGCGUUGAGCuuguuGGCCAcgccgccgaugaUCGGGCc -3'
miRNA:   3'- aUGcGCGCAGCUCGu----CCGGU------------AGUCUG- -5'
23189 5' -57.9 NC_005259.1 + 6155 0.68 0.483196
Target:  5'- aGCGCGCGguugaCGAGCAG-CCGcUCGGcGCg -3'
miRNA:   3'- aUGCGCGCa----GCUCGUCcGGU-AGUC-UG- -5'
23189 5' -57.9 NC_005259.1 + 59481 0.71 0.338225
Target:  5'- cGCGCGCGUCGAccGCcgccGGGUCAcCGGAg -3'
miRNA:   3'- aUGCGCGCAGCU--CG----UCCGGUaGUCUg -5'
23189 5' -57.9 NC_005259.1 + 3199 0.71 0.338225
Target:  5'- gACGCGCugGUCGAaacGCuGGCCGUC-GACc -3'
miRNA:   3'- aUGCGCG--CAGCU---CGuCCGGUAGuCUG- -5'
23189 5' -57.9 NC_005259.1 + 32752 0.71 0.314805
Target:  5'- aGCGCcuGCGUCG-GCAGcGCCAcgcCGGACa -3'
miRNA:   3'- aUGCG--CGCAGCuCGUC-CGGUa--GUCUG- -5'
23189 5' -57.9 NC_005259.1 + 38100 0.75 0.188133
Target:  5'- aACGCGagGUgugccgguugagcgUGAGCAGGCCAUCGGAa -3'
miRNA:   3'- aUGCGCg-CA--------------GCUCGUCCGGUAGUCUg -5'
23189 5' -57.9 NC_005259.1 + 17894 0.74 0.194684
Target:  5'- gGCGgGaucuGUCcGGCAGGCCAUCAGAUc -3'
miRNA:   3'- aUGCgCg---CAGcUCGUCCGGUAGUCUG- -5'
23189 5' -57.9 NC_005259.1 + 54773 0.73 0.239507
Target:  5'- gGCGCGCGUCGuGCguaucGGGCCGggCAacGACg -3'
miRNA:   3'- aUGCGCGCAGCuCG-----UCCGGUa-GU--CUG- -5'
23189 5' -57.9 NC_005259.1 + 6012 0.73 0.257772
Target:  5'- -uCGCGCGUCGAcucgauggcauugGCAGGCUGUgGGAa -3'
miRNA:   3'- auGCGCGCAGCU-------------CGUCCGGUAgUCUg -5'
23189 5' -57.9 NC_005259.1 + 64789 0.72 0.299885
Target:  5'- cACGCucauCGagaUCGAGCAGGCCAagCAGGCc -3'
miRNA:   3'- aUGCGc---GC---AGCUCGUCCGGUa-GUCUG- -5'
23189 5' -57.9 NC_005259.1 + 38716 0.71 0.307276
Target:  5'- --aGCaGCGUCGAGCucuacgguGGCCcAUUAGACg -3'
miRNA:   3'- augCG-CGCAGCUCGu-------CCGG-UAGUCUG- -5'
23189 5' -57.9 NC_005259.1 + 24846 0.71 0.307276
Target:  5'- aACGUGCgGUCGAGCAGcgcGCCgguGUCGGAg -3'
miRNA:   3'- aUGCGCG-CAGCUCGUC---CGG---UAGUCUg -5'
23189 5' -57.9 NC_005259.1 + 27687 0.71 0.307276
Target:  5'- aGCGCGagGUCGAccucgaaaaggGCGGuGCCGUCGGAUa -3'
miRNA:   3'- aUGCGCg-CAGCU-----------CGUC-CGGUAGUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.