miRNA display CGI


Results 21 - 34 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23189 5' -57.9 NC_005259.1 + 32752 0.71 0.314805
Target:  5'- aGCGCcuGCGUCG-GCAGcGCCAcgcCGGACa -3'
miRNA:   3'- aUGCG--CGCAGCuCGUC-CGGUa--GUCUG- -5'
23189 5' -57.9 NC_005259.1 + 33383 0.66 0.598064
Target:  5'- cACGCuGCGUCGAGUAGu---UCGGGCc -3'
miRNA:   3'- aUGCG-CGCAGCUCGUCcgguAGUCUG- -5'
23189 5' -57.9 NC_005259.1 + 34113 0.67 0.565987
Target:  5'- gGgGUGCcUCGGGCaggacGGGCCGcUCGGGCa -3'
miRNA:   3'- aUgCGCGcAGCUCG-----UCCGGU-AGUCUG- -5'
23189 5' -57.9 NC_005259.1 + 36811 0.68 0.483196
Target:  5'- cUGCGCGCcUCGGucuGCGacuuGGCC-UCAGACa -3'
miRNA:   3'- -AUGCGCGcAGCU---CGU----CCGGuAGUCUG- -5'
23189 5' -57.9 NC_005259.1 + 38100 0.75 0.188133
Target:  5'- aACGCGagGUgugccgguugagcgUGAGCAGGCCAUCGGAa -3'
miRNA:   3'- aUGCGCg-CA--------------GCUCGUCCGGUAGUCUg -5'
23189 5' -57.9 NC_005259.1 + 38128 0.66 0.608823
Target:  5'- -uCGC-CGUCGAGCaAGGUC-UCAuGACg -3'
miRNA:   3'- auGCGcGCAGCUCG-UCCGGuAGU-CUG- -5'
23189 5' -57.9 NC_005259.1 + 38716 0.71 0.307276
Target:  5'- --aGCaGCGUCGAGCucuacgguGGCCcAUUAGACg -3'
miRNA:   3'- augCG-CGCAGCUCGu-------CCGG-UAGUCUG- -5'
23189 5' -57.9 NC_005259.1 + 54773 0.73 0.239507
Target:  5'- gGCGCGCGUCGuGCguaucGGGCCGggCAacGACg -3'
miRNA:   3'- aUGCGCGCAGCuCG-----UCCGGUa-GU--CUG- -5'
23189 5' -57.9 NC_005259.1 + 58252 0.67 0.510562
Target:  5'- cGCGCuGCcgggcgaucaucauGUCGGGCGGGUCAUCgagguGGGCc -3'
miRNA:   3'- aUGCG-CG--------------CAGCUCGUCCGGUAG-----UCUG- -5'
23189 5' -57.9 NC_005259.1 + 58750 0.69 0.397657
Target:  5'- gGCG-GUGUgcuugaUGAGCGGGCCGgucUCAGGCa -3'
miRNA:   3'- aUGCgCGCA------GCUCGUCCGGU---AGUCUG- -5'
23189 5' -57.9 NC_005259.1 + 59104 0.69 0.434497
Target:  5'- cGCGCGCGaCGAGCuuucGGCCcUCGcGCu -3'
miRNA:   3'- aUGCGCGCaGCUCGu---CCGGuAGUcUG- -5'
23189 5' -57.9 NC_005259.1 + 59481 0.71 0.338225
Target:  5'- cGCGCGCGUCGAccGCcgccGGGUCAcCGGAg -3'
miRNA:   3'- aUGCGCGCAGCU--CG----UCCGGUaGUCUg -5'
23189 5' -57.9 NC_005259.1 + 62436 0.7 0.346307
Target:  5'- -gUGCGCGgCGuGuCAGGCCGccUCGGACa -3'
miRNA:   3'- auGCGCGCaGCuC-GUCCGGU--AGUCUG- -5'
23189 5' -57.9 NC_005259.1 + 64789 0.72 0.299885
Target:  5'- cACGCucauCGagaUCGAGCAGGCCAagCAGGCc -3'
miRNA:   3'- aUGCGc---GC---AGCUCGUCCGGUa-GUCUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.