Results 1 - 16 of 16 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23190 | 5' | -56.8 | NC_005259.1 | + | 20517 | 0.66 | 0.720249 |
Target: 5'- cGUCGGCCUGUuccucGACGCgcuUGAGGGccGCGa -3' miRNA: 3'- cUAGCCGGGUAu----CUGUG---GCUCCC--UGC- -5' |
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23190 | 5' | -56.8 | NC_005259.1 | + | 52566 | 0.66 | 0.699396 |
Target: 5'- cGAgCGGCCCAaaccGGGCACCGucGGcauCGg -3' miRNA: 3'- -CUaGCCGGGUa---UCUGUGGCucCCu--GC- -5' |
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23190 | 5' | -56.8 | NC_005259.1 | + | 24066 | 0.66 | 0.699396 |
Target: 5'- uGAUCgGGUCCAUGG-CACC-AGcGGGCa -3' miRNA: 3'- -CUAG-CCGGGUAUCuGUGGcUC-CCUGc -5' |
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23190 | 5' | -56.8 | NC_005259.1 | + | 40148 | 0.67 | 0.667681 |
Target: 5'- aGUCGaccGCCC-----CACCGAGGGACGu -3' miRNA: 3'- cUAGC---CGGGuaucuGUGGCUCCCUGC- -5' |
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23190 | 5' | -56.8 | NC_005259.1 | + | 42588 | 0.67 | 0.655967 |
Target: 5'- gGcgCGGCggugccgCCGUAGAacgcacCGCCGAGcGGGCGg -3' miRNA: 3'- -CuaGCCG-------GGUAUCU------GUGGCUC-CCUGC- -5' |
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23190 | 5' | -56.8 | NC_005259.1 | + | 9131 | 0.67 | 0.624997 |
Target: 5'- --cUGGCUCGUuGugGCCGAaaccgGGGGCGa -3' miRNA: 3'- cuaGCCGGGUAuCugUGGCU-----CCCUGC- -5' |
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23190 | 5' | -56.8 | NC_005259.1 | + | 60052 | 0.67 | 0.624997 |
Target: 5'- cGGUgGGCgcgCCGUggacGGGCACCGugccGGGACGu -3' miRNA: 3'- -CUAgCCG---GGUA----UCUGUGGCu---CCCUGC- -5' |
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23190 | 5' | -56.8 | NC_005259.1 | + | 14661 | 0.67 | 0.624997 |
Target: 5'- cAUCGGgCCA---GCAUCGAGGGuCGg -3' miRNA: 3'- cUAGCCgGGUaucUGUGGCUCCCuGC- -5' |
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23190 | 5' | -56.8 | NC_005259.1 | + | 24037 | 0.67 | 0.614318 |
Target: 5'- --gCGGUCaucgGGAUGCCGAGGGcCGg -3' miRNA: 3'- cuaGCCGGgua-UCUGUGGCUCCCuGC- -5' |
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23190 | 5' | -56.8 | NC_005259.1 | + | 6891 | 0.68 | 0.571831 |
Target: 5'- cGUCGcGCUCGUAGucaguCACCGAGGuGAUc -3' miRNA: 3'- cUAGC-CGGGUAUCu----GUGGCUCC-CUGc -5' |
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23190 | 5' | -56.8 | NC_005259.1 | + | 3313 | 0.68 | 0.561307 |
Target: 5'- -cUCGGCCCGacgAGcGgGCCGAGuaGGACGa -3' miRNA: 3'- cuAGCCGGGUa--UC-UgUGGCUC--CCUGC- -5' |
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23190 | 5' | -56.8 | NC_005259.1 | + | 65880 | 0.69 | 0.537315 |
Target: 5'- uGcgCGGCaCCGUGGGCAgcggacggcaccgcCCGuGGGACu -3' miRNA: 3'- -CuaGCCG-GGUAUCUGU--------------GGCuCCCUGc -5' |
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23190 | 5' | -56.8 | NC_005259.1 | + | 59912 | 0.69 | 0.519812 |
Target: 5'- ---aGGCCCGUugccCGCCGAGGG-CGg -3' miRNA: 3'- cuagCCGGGUAucu-GUGGCUCCCuGC- -5' |
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23190 | 5' | -56.8 | NC_005259.1 | + | 52316 | 0.75 | 0.239095 |
Target: 5'- uGGUCGGCgauCC-UGGGCACCGAGGuGACc -3' miRNA: 3'- -CUAGCCG---GGuAUCUGUGGCUCC-CUGc -5' |
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23190 | 5' | -56.8 | NC_005259.1 | + | 26470 | 0.83 | 0.069309 |
Target: 5'- --cCGGCCCcgAUGGGCACCGAGGuGGCGg -3' miRNA: 3'- cuaGCCGGG--UAUCUGUGGCUCC-CUGC- -5' |
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23190 | 5' | -56.8 | NC_005259.1 | + | 3440 | 1.09 | 0.000947 |
Target: 5'- aGAUCGGCCCAUAGACACCGAGGGACGg -3' miRNA: 3'- -CUAGCCGGGUAUCUGUGGCUCCCUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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