Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23191 | 3' | -55.6 | NC_005259.1 | + | 3593 | 1.12 | 0.00068 |
Target: 5'- aCACCGUCAUGCUCACGGUGGCCAAGCg -3' miRNA: 3'- -GUGGCAGUACGAGUGCCACCGGUUCG- -5' |
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23191 | 3' | -55.6 | NC_005259.1 | + | 17747 | 0.82 | 0.102625 |
Target: 5'- aCGCCGUUgcgGCUCGCGGUGGUCAcggugcgcGGCa -3' miRNA: 3'- -GUGGCAGua-CGAGUGCCACCGGU--------UCG- -5' |
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23191 | 3' | -55.6 | NC_005259.1 | + | 38715 | 0.76 | 0.236662 |
Target: 5'- gCAgCGUCGaGCUCuACGGUGGCCcauuagacggcGAGCg -3' miRNA: 3'- -GUgGCAGUaCGAG-UGCCACCGG-----------UUCG- -5' |
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23191 | 3' | -55.6 | NC_005259.1 | + | 33933 | 0.75 | 0.26203 |
Target: 5'- aCGCCGcCcuUGCUgACGGUGGCCu-GCg -3' miRNA: 3'- -GUGGCaGu-ACGAgUGCCACCGGuuCG- -5' |
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23191 | 3' | -55.6 | NC_005259.1 | + | 54265 | 0.72 | 0.40343 |
Target: 5'- uCGCCGagAUGUaCGCGcUGGCCGGGCc -3' miRNA: 3'- -GUGGCagUACGaGUGCcACCGGUUCG- -5' |
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23191 | 3' | -55.6 | NC_005259.1 | + | 12924 | 0.71 | 0.470039 |
Target: 5'- gACCGUCgagcagaucgGUGCUCGuCGG-GGCCAccGCg -3' miRNA: 3'- gUGGCAG----------UACGAGU-GCCaCCGGUu-CG- -5' |
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23191 | 3' | -55.6 | NC_005259.1 | + | 17469 | 0.7 | 0.500259 |
Target: 5'- gACC-UCGUGC--ACGG-GGCCGGGCa -3' miRNA: 3'- gUGGcAGUACGagUGCCaCCGGUUCG- -5' |
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23191 | 3' | -55.6 | NC_005259.1 | + | 53459 | 0.7 | 0.520875 |
Target: 5'- cCGCCGUCAcuggccggUGC-CACccucaGGUGGCCAcccucggggccAGCg -3' miRNA: 3'- -GUGGCAGU--------ACGaGUG-----CCACCGGU-----------UCG- -5' |
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23191 | 3' | -55.6 | NC_005259.1 | + | 31263 | 0.7 | 0.531307 |
Target: 5'- cCGCCGaCGagcUGCUCgaugaccagcGCGGUGGCCccuGCg -3' miRNA: 3'- -GUGGCaGU---ACGAG----------UGCCACCGGuu-CG- -5' |
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23191 | 3' | -55.6 | NC_005259.1 | + | 24217 | 0.69 | 0.541814 |
Target: 5'- gGCgGUCGagaacagacGCUCGcCGGUGGCCuGGCc -3' miRNA: 3'- gUGgCAGUa--------CGAGU-GCCACCGGuUCG- -5' |
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23191 | 3' | -55.6 | NC_005259.1 | + | 54148 | 0.69 | 0.541814 |
Target: 5'- aCACgGUCGUGCUCGCGaGguucgcgcUGcCCGAGCc -3' miRNA: 3'- -GUGgCAGUACGAGUGC-C--------ACcGGUUCG- -5' |
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23191 | 3' | -55.6 | NC_005259.1 | + | 56014 | 0.69 | 0.55239 |
Target: 5'- cCACCGUgGUGCUCGCGuucgcacucGGCUAcGCc -3' miRNA: 3'- -GUGGCAgUACGAGUGCca-------CCGGUuCG- -5' |
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23191 | 3' | -55.6 | NC_005259.1 | + | 62645 | 0.69 | 0.573717 |
Target: 5'- uGCCGUaCGUGCgCACGuuGUcGCCGGGCg -3' miRNA: 3'- gUGGCA-GUACGaGUGC--CAcCGGUUCG- -5' |
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23191 | 3' | -55.6 | NC_005259.1 | + | 27519 | 0.69 | 0.584454 |
Target: 5'- aCGCCGUCGaGCacgaccUCgGCGGUGG-CGGGCa -3' miRNA: 3'- -GUGGCAGUaCG------AG-UGCCACCgGUUCG- -5' |
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23191 | 3' | -55.6 | NC_005259.1 | + | 45017 | 0.68 | 0.606036 |
Target: 5'- -cCCG-CGcGCcacCACGGUGGCCAAGa -3' miRNA: 3'- guGGCaGUaCGa--GUGCCACCGGUUCg -5' |
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23191 | 3' | -55.6 | NC_005259.1 | + | 40769 | 0.68 | 0.606036 |
Target: 5'- cCACCGUCG-GCggCGgGGUGGUCGAu- -3' miRNA: 3'- -GUGGCAGUaCGa-GUgCCACCGGUUcg -5' |
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23191 | 3' | -55.6 | NC_005259.1 | + | 42108 | 0.68 | 0.606036 |
Target: 5'- aCACCaUCgGUGUucaUCACGG-GGCCGGGUu -3' miRNA: 3'- -GUGGcAG-UACG---AGUGCCaCCGGUUCG- -5' |
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23191 | 3' | -55.6 | NC_005259.1 | + | 45751 | 0.68 | 0.606036 |
Target: 5'- cCACC-UCGUGg--GCGGUGGCCAccaugAGCa -3' miRNA: 3'- -GUGGcAGUACgagUGCCACCGGU-----UCG- -5' |
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23191 | 3' | -55.6 | NC_005259.1 | + | 16754 | 0.68 | 0.616864 |
Target: 5'- cUACCGcCcgGCcccucUCAgGGgGGCCGGGCa -3' miRNA: 3'- -GUGGCaGuaCG-----AGUgCCaCCGGUUCG- -5' |
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23191 | 3' | -55.6 | NC_005259.1 | + | 13960 | 0.68 | 0.649389 |
Target: 5'- uGCCGagGUGCUUgccuCGGUGGCagucuGCg -3' miRNA: 3'- gUGGCagUACGAGu---GCCACCGguu--CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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