miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23191 3' -55.6 NC_005259.1 + 2766 0.66 0.76932
Target:  5'- aCGCgGUCGUGCagccaucgacgcagCGCGGcccGcGCCGGGCg -3'
miRNA:   3'- -GUGgCAGUACGa-------------GUGCCa--C-CGGUUCG- -5'
23191 3' -55.6 NC_005259.1 + 3593 1.12 0.00068
Target:  5'- aCACCGUCAUGCUCACGGUGGCCAAGCg -3'
miRNA:   3'- -GUGGCAGUACGAGUGCCACCGGUUCG- -5'
23191 3' -55.6 NC_005259.1 + 9147 0.67 0.681774
Target:  5'- aCACCGagggaUCAUGCUgGCucguuGUGGCCGaaaccgggGGCg -3'
miRNA:   3'- -GUGGC-----AGUACGAgUGc----CACCGGU--------UCG- -5'
23191 3' -55.6 NC_005259.1 + 10071 0.67 0.713744
Target:  5'- -gUCGUCG-GCgggCGCGGUGGC--AGCg -3'
miRNA:   3'- guGGCAGUaCGa--GUGCCACCGguUCG- -5'
23191 3' -55.6 NC_005259.1 + 12510 0.66 0.755227
Target:  5'- aACCGUC---CUCgACGGUGGCgaugauucccuCAGGCa -3'
miRNA:   3'- gUGGCAGuacGAG-UGCCACCG-----------GUUCG- -5'
23191 3' -55.6 NC_005259.1 + 12924 0.71 0.470039
Target:  5'- gACCGUCgagcagaucgGUGCUCGuCGG-GGCCAccGCg -3'
miRNA:   3'- gUGGCAG----------UACGAGU-GCCaCCGGUu-CG- -5'
23191 3' -55.6 NC_005259.1 + 13960 0.68 0.649389
Target:  5'- uGCCGagGUGCUUgccuCGGUGGCagucuGCg -3'
miRNA:   3'- gUGGCagUACGAGu---GCCACCGguu--CG- -5'
23191 3' -55.6 NC_005259.1 + 15416 0.66 0.77528
Target:  5'- aCACCGUgAgguguuccuuuuUGCUCGuCGG-GGUCAgcaGGCg -3'
miRNA:   3'- -GUGGCAgU------------ACGAGU-GCCaCCGGU---UCG- -5'
23191 3' -55.6 NC_005259.1 + 16405 0.66 0.745012
Target:  5'- uCGCCGagCAccaGCgccgUACGGUGGCCAacuacgucgAGCu -3'
miRNA:   3'- -GUGGCa-GUa--CGa---GUGCCACCGGU---------UCG- -5'
23191 3' -55.6 NC_005259.1 + 16754 0.68 0.616864
Target:  5'- cUACCGcCcgGCcccucUCAgGGgGGCCGGGCa -3'
miRNA:   3'- -GUGGCaGuaCG-----AGUgCCaCCGGUUCG- -5'
23191 3' -55.6 NC_005259.1 + 17469 0.7 0.500259
Target:  5'- gACC-UCGUGC--ACGG-GGCCGGGCa -3'
miRNA:   3'- gUGGcAGUACGagUGCCaCCGGUUCG- -5'
23191 3' -55.6 NC_005259.1 + 17747 0.82 0.102625
Target:  5'- aCGCCGUUgcgGCUCGCGGUGGUCAcggugcgcGGCa -3'
miRNA:   3'- -GUGGCAGua-CGAGUGCCACCGGU--------UCG- -5'
23191 3' -55.6 NC_005259.1 + 24217 0.69 0.541814
Target:  5'- gGCgGUCGagaacagacGCUCGcCGGUGGCCuGGCc -3'
miRNA:   3'- gUGgCAGUa--------CGAGU-GCCACCGGuUCG- -5'
23191 3' -55.6 NC_005259.1 + 27519 0.69 0.584454
Target:  5'- aCGCCGUCGaGCacgaccUCgGCGGUGG-CGGGCa -3'
miRNA:   3'- -GUGGCAGUaCG------AG-UGCCACCgGUUCG- -5'
23191 3' -55.6 NC_005259.1 + 31263 0.7 0.531307
Target:  5'- cCGCCGaCGagcUGCUCgaugaccagcGCGGUGGCCccuGCg -3'
miRNA:   3'- -GUGGCaGU---ACGAG----------UGCCACCGGuu-CG- -5'
23191 3' -55.6 NC_005259.1 + 33360 0.67 0.712688
Target:  5'- cCGCCGcCGcUGC-CGCuggcgagGGUGGCCAGcGCg -3'
miRNA:   3'- -GUGGCaGU-ACGaGUG-------CCACCGGUU-CG- -5'
23191 3' -55.6 NC_005259.1 + 33933 0.75 0.26203
Target:  5'- aCGCCGcCcuUGCUgACGGUGGCCu-GCg -3'
miRNA:   3'- -GUGGCaGu-ACGAgUGCCACCGGuuCG- -5'
23191 3' -55.6 NC_005259.1 + 38715 0.76 0.236662
Target:  5'- gCAgCGUCGaGCUCuACGGUGGCCcauuagacggcGAGCg -3'
miRNA:   3'- -GUgGCAGUaCGAG-UGCCACCGG-----------UUCG- -5'
23191 3' -55.6 NC_005259.1 + 40726 0.66 0.762305
Target:  5'- aACCGUCG-GCUCugccgauguaggccACGGUGccGCCcuGCg -3'
miRNA:   3'- gUGGCAGUaCGAG--------------UGCCAC--CGGuuCG- -5'
23191 3' -55.6 NC_005259.1 + 40769 0.68 0.606036
Target:  5'- cCACCGUCG-GCggCGgGGUGGUCGAu- -3'
miRNA:   3'- -GUGGCAGUaCGa-GUgCCACCGGUUcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.