Results 1 - 20 of 27 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23191 | 5' | -52.2 | NC_005259.1 | + | 2041 | 0.66 | 0.902074 |
Target: 5'- cGAGCUguuucuugCGCGCCUcGCGGugAAUcGCGu -3' miRNA: 3'- -CUCGA--------GCGUGGA-CGCUugUUGuUGCu -5' |
|||||||
23191 | 5' | -52.2 | NC_005259.1 | + | 3559 | 1.09 | 0.00239 |
Target: 5'- uGAGCUCGCACCUGCGAACAACAACGAg -3' miRNA: 3'- -CUCGAGCGUGGACGCUUGUUGUUGCU- -5' |
|||||||
23191 | 5' | -52.2 | NC_005259.1 | + | 8003 | 0.75 | 0.418783 |
Target: 5'- uGAGCUCGCGCCcgucgacgGUGAGCuuccacucgguGGCGGCGAg -3' miRNA: 3'- -CUCGAGCGUGGa-------CGCUUG-----------UUGUUGCU- -5' |
|||||||
23191 | 5' | -52.2 | NC_005259.1 | + | 8767 | 0.66 | 0.887737 |
Target: 5'- uGAGCUCGCuggcacGCUUGCGuGCGGguGCa- -3' miRNA: 3'- -CUCGAGCG------UGGACGCuUGUUguUGcu -5' |
|||||||
23191 | 5' | -52.2 | NC_005259.1 | + | 14117 | 0.67 | 0.83852 |
Target: 5'- cAGCagGcCACC-GCGAACggUAGCGAa -3' miRNA: 3'- cUCGagC-GUGGaCGCUUGuuGUUGCU- -5' |
|||||||
23191 | 5' | -52.2 | NC_005259.1 | + | 16466 | 0.66 | 0.894324 |
Target: 5'- uGGGC-CGCGCCccaagauuggaugUGCGAGCccGACAugGu -3' miRNA: 3'- -CUCGaGCGUGG-------------ACGCUUG--UUGUugCu -5' |
|||||||
23191 | 5' | -52.2 | NC_005259.1 | + | 22423 | 0.66 | 0.902074 |
Target: 5'- cGGCgucgacCGCGCCgcccgagGCGAGCAGCGcgucguugGCGGu -3' miRNA: 3'- cUCGa-----GCGUGGa------CGCUUGUUGU--------UGCU- -5' |
|||||||
23191 | 5' | -52.2 | NC_005259.1 | + | 24770 | 0.66 | 0.895042 |
Target: 5'- cGAGCUCGCccgccgcgccGCCcGCGcGCGAgaaguCGGCGAc -3' miRNA: 3'- -CUCGAGCG----------UGGaCGCuUGUU-----GUUGCU- -5' |
|||||||
23191 | 5' | -52.2 | NC_005259.1 | + | 25099 | 0.68 | 0.791338 |
Target: 5'- -uGCcCGCGCCgGCugaucgauGGGCAGCGACGAc -3' miRNA: 3'- cuCGaGCGUGGaCG--------CUUGUUGUUGCU- -5' |
|||||||
23191 | 5' | -52.2 | NC_005259.1 | + | 27242 | 0.69 | 0.729246 |
Target: 5'- cGAcCUCGCAgCCUugcGCGAACAACAcCGGc -3' miRNA: 3'- -CUcGAGCGU-GGA---CGCUUGUUGUuGCU- -5' |
|||||||
23191 | 5' | -52.2 | NC_005259.1 | + | 29257 | 0.67 | 0.847329 |
Target: 5'- uGGGC-CGgAUgUGCGAcagcgGCAGCAGCGGc -3' miRNA: 3'- -CUCGaGCgUGgACGCU-----UGUUGUUGCU- -5' |
|||||||
23191 | 5' | -52.2 | NC_005259.1 | + | 32759 | 0.71 | 0.630164 |
Target: 5'- cAGCgcgaGCGCCUGCGu-CGGCAGCGc -3' miRNA: 3'- cUCGag--CGUGGACGCuuGUUGUUGCu -5' |
|||||||
23191 | 5' | -52.2 | NC_005259.1 | + | 37831 | 0.68 | 0.791338 |
Target: 5'- cGAGCUCGC-CCU-UGAGCcaguCGGCGAg -3' miRNA: 3'- -CUCGAGCGuGGAcGCUUGuu--GUUGCU- -5' |
|||||||
23191 | 5' | -52.2 | NC_005259.1 | + | 42497 | 0.67 | 0.83852 |
Target: 5'- cGAGCUCGcCGCCcgGCGAGaagagcGCggUGAg -3' miRNA: 3'- -CUCGAGC-GUGGa-CGCUUgu----UGuuGCU- -5' |
|||||||
23191 | 5' | -52.2 | NC_005259.1 | + | 43016 | 0.68 | 0.801159 |
Target: 5'- cGGGCa-GCGCCgagGUGAACAacggaaguaGCAGCGGg -3' miRNA: 3'- -CUCGagCGUGGa--CGCUUGU---------UGUUGCU- -5' |
|||||||
23191 | 5' | -52.2 | NC_005259.1 | + | 45654 | 0.7 | 0.674654 |
Target: 5'- cGGGCUCGaggcuGCCUGCGAGgccgccgaGGCAugGAu -3' miRNA: 3'- -CUCGAGCg----UGGACGCUUg-------UUGUugCU- -5' |
|||||||
23191 | 5' | -52.2 | NC_005259.1 | + | 46115 | 0.67 | 0.864243 |
Target: 5'- -cGgUCGCGCgCUGCGucuguACGACGGCa- -3' miRNA: 3'- cuCgAGCGUG-GACGCu----UGUUGUUGcu -5' |
|||||||
23191 | 5' | -52.2 | NC_005259.1 | + | 49797 | 0.74 | 0.468151 |
Target: 5'- cGAGCUCGUgg-UGCGGGCGGCGACGu -3' miRNA: 3'- -CUCGAGCGuggACGCUUGUUGUUGCu -5' |
|||||||
23191 | 5' | -52.2 | NC_005259.1 | + | 51211 | 0.7 | 0.708714 |
Target: 5'- cGAGCgugCGCACCgcgauagcgaggccgGUGAGCu-CAGCGAg -3' miRNA: 3'- -CUCGa--GCGUGGa--------------CGCUUGuuGUUGCU- -5' |
|||||||
23191 | 5' | -52.2 | NC_005259.1 | + | 57866 | 0.74 | 0.467134 |
Target: 5'- cGAGC-CGuCGCCUGCGggUAACAcuucgguGCGGc -3' miRNA: 3'- -CUCGaGC-GUGGACGCuuGUUGU-------UGCU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home