miRNA display CGI


Results 1 - 20 of 27 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23191 5' -52.2 NC_005259.1 + 2041 0.66 0.902074
Target:  5'- cGAGCUguuucuugCGCGCCUcGCGGugAAUcGCGu -3'
miRNA:   3'- -CUCGA--------GCGUGGA-CGCUugUUGuUGCu -5'
23191 5' -52.2 NC_005259.1 + 43016 0.68 0.801159
Target:  5'- cGGGCa-GCGCCgagGUGAACAacggaaguaGCAGCGGg -3'
miRNA:   3'- -CUCGagCGUGGa--CGCUUGU---------UGUUGCU- -5'
23191 5' -52.2 NC_005259.1 + 42497 0.67 0.83852
Target:  5'- cGAGCUCGcCGCCcgGCGAGaagagcGCggUGAg -3'
miRNA:   3'- -CUCGAGC-GUGGa-CGCUUgu----UGuuGCU- -5'
23191 5' -52.2 NC_005259.1 + 14117 0.67 0.83852
Target:  5'- cAGCagGcCACC-GCGAACggUAGCGAa -3'
miRNA:   3'- cUCGagC-GUGGaCGCUUGuuGUUGCU- -5'
23191 5' -52.2 NC_005259.1 + 58564 0.67 0.847329
Target:  5'- cGAGCUCGaCAUCgaGUGGcuCGACGGCGGu -3'
miRNA:   3'- -CUCGAGC-GUGGa-CGCUu-GUUGUUGCU- -5'
23191 5' -52.2 NC_005259.1 + 29257 0.67 0.847329
Target:  5'- uGGGC-CGgAUgUGCGAcagcgGCAGCAGCGGc -3'
miRNA:   3'- -CUCGaGCgUGgACGCU-----UGUUGUUGCU- -5'
23191 5' -52.2 NC_005259.1 + 46115 0.67 0.864243
Target:  5'- -cGgUCGCGCgCUGCGucuguACGACGGCa- -3'
miRNA:   3'- cuCgAGCGUG-GACGCu----UGUUGUUGcu -5'
23191 5' -52.2 NC_005259.1 + 67811 0.67 0.872332
Target:  5'- uGAGC-CGCucACCUGCuacGACuGCAACGGc -3'
miRNA:   3'- -CUCGaGCG--UGGACGc--UUGuUGUUGCU- -5'
23191 5' -52.2 NC_005259.1 + 65910 0.66 0.880166
Target:  5'- aGAGC-CGCGCa-GCGAugAGCgGGCGGc -3'
miRNA:   3'- -CUCGaGCGUGgaCGCUugUUG-UUGCU- -5'
23191 5' -52.2 NC_005259.1 + 37831 0.68 0.791338
Target:  5'- cGAGCUCGC-CCU-UGAGCcaguCGGCGAg -3'
miRNA:   3'- -CUCGAGCGuGGAcGCUUGuu--GUUGCU- -5'
23191 5' -52.2 NC_005259.1 + 25099 0.68 0.791338
Target:  5'- -uGCcCGCGCCgGCugaucgauGGGCAGCGACGAc -3'
miRNA:   3'- cuCGaGCGUGGaCG--------CUUGUUGUUGCU- -5'
23191 5' -52.2 NC_005259.1 + 60804 0.69 0.760901
Target:  5'- -cGUUuaCGCGCCcgaUGuCGGGCAACAGCGAg -3'
miRNA:   3'- cuCGA--GCGUGG---AC-GCUUGUUGUUGCU- -5'
23191 5' -52.2 NC_005259.1 + 8003 0.75 0.418783
Target:  5'- uGAGCUCGCGCCcgucgacgGUGAGCuuccacucgguGGCGGCGAg -3'
miRNA:   3'- -CUCGAGCGUGGa-------CGCUUG-----------UUGUUGCU- -5'
23191 5' -52.2 NC_005259.1 + 57866 0.74 0.467134
Target:  5'- cGAGC-CGuCGCCUGCGggUAACAcuucgguGCGGc -3'
miRNA:   3'- -CUCGaGC-GUGGACGCuuGUUGU-------UGCU- -5'
23191 5' -52.2 NC_005259.1 + 49797 0.74 0.468151
Target:  5'- cGAGCUCGUgg-UGCGGGCGGCGACGu -3'
miRNA:   3'- -CUCGAGCGuggACGCUUGUUGUUGCu -5'
23191 5' -52.2 NC_005259.1 + 68041 0.72 0.552729
Target:  5'- cAGCUCGCGCaacgGCucAACGGCGACGAg -3'
miRNA:   3'- cUCGAGCGUGga--CGc-UUGUUGUUGCU- -5'
23191 5' -52.2 NC_005259.1 + 32759 0.71 0.630164
Target:  5'- cAGCgcgaGCGCCUGCGu-CGGCAGCGc -3'
miRNA:   3'- cUCGag--CGUGGACGCuuGUUGUUGCu -5'
23191 5' -52.2 NC_005259.1 + 45654 0.7 0.674654
Target:  5'- cGGGCUCGaggcuGCCUGCGAGgccgccgaGGCAugGAu -3'
miRNA:   3'- -CUCGAGCg----UGGACGCUUg-------UUGUugCU- -5'
23191 5' -52.2 NC_005259.1 + 51211 0.7 0.708714
Target:  5'- cGAGCgugCGCACCgcgauagcgaggccgGUGAGCu-CAGCGAg -3'
miRNA:   3'- -CUCGa--GCGUGGa--------------CGCUUGuuGUUGCU- -5'
23191 5' -52.2 NC_005259.1 + 27242 0.69 0.729246
Target:  5'- cGAcCUCGCAgCCUugcGCGAACAACAcCGGc -3'
miRNA:   3'- -CUcGAGCGU-GGA---CGCUUGUUGUuGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.