miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23193 3' -55.6 NC_005259.1 + 4898 1.04 0.002114
Target:  5'- cAUGCACUCGACCGCGCGCUUGAUCAAu -3'
miRNA:   3'- -UACGUGAGCUGGCGCGCGAACUAGUU- -5'
23193 3' -55.6 NC_005259.1 + 59492 0.71 0.389413
Target:  5'- cGUGCGCUCG-UCGCGCGCgucgaccgccgccgGGUCAc -3'
miRNA:   3'- -UACGUGAGCuGGCGCGCGaa------------CUAGUu -5'
23193 3' -55.6 NC_005259.1 + 5214 0.69 0.527467
Target:  5'- cGUG-ACUUGGCCGCGUuCUUGAUCu- -3'
miRNA:   3'- -UACgUGAGCUGGCGCGcGAACUAGuu -5'
23193 3' -55.6 NC_005259.1 + 46393 0.67 0.625782
Target:  5'- cUGCACgccgcCGACCGC-CGCccGAUCAu -3'
miRNA:   3'- uACGUGa----GCUGGCGcGCGaaCUAGUu -5'
23193 3' -55.6 NC_005259.1 + 17234 0.67 0.625782
Target:  5'- uUGCGCUCGGCgaGCGC-CUUGAg--- -3'
miRNA:   3'- uACGUGAGCUGg-CGCGcGAACUaguu -5'
23193 3' -55.6 NC_005259.1 + 15994 0.67 0.658978
Target:  5'- uUGC-CUCGACUGgGCGCUgcggUGGcgUCGAg -3'
miRNA:   3'- uACGuGAGCUGGCgCGCGA----ACU--AGUU- -5'
23193 3' -55.6 NC_005259.1 + 62630 0.67 0.658978
Target:  5'- -cGUugUCG-CCGgGCGCgaUGGUCAAc -3'
miRNA:   3'- uaCGugAGCuGGCgCGCGa-ACUAGUU- -5'
23193 3' -55.6 NC_005259.1 + 20543 0.67 0.658978
Target:  5'- -aGCGCguUCcACCGCGCGCcgGGUCGc -3'
miRNA:   3'- uaCGUG--AGcUGGCGCGCGaaCUAGUu -5'
23193 3' -55.6 NC_005259.1 + 36134 0.66 0.670008
Target:  5'- uUGaC-CUCGA-CGCGCGCggUGAUCGAu -3'
miRNA:   3'- uAC-GuGAGCUgGCGCGCGa-ACUAGUU- -5'
23193 3' -55.6 NC_005259.1 + 33676 0.66 0.681001
Target:  5'- uGUGUACgCGACCcCGCGUagcgcgUGAUCGAg -3'
miRNA:   3'- -UACGUGaGCUGGcGCGCGa-----ACUAGUU- -5'
23193 3' -55.6 NC_005259.1 + 7146 0.66 0.702835
Target:  5'- -aGCAcCUCGGCCaccgccucGCGUGCcgcgUGAUCAc -3'
miRNA:   3'- uaCGU-GAGCUGG--------CGCGCGa---ACUAGUu -5'
23193 3' -55.6 NC_005259.1 + 24260 0.66 0.72439
Target:  5'- -cGCcCUCGACCGCGCcgagGCUcuUGAgCAc -3'
miRNA:   3'- uaCGuGAGCUGGCGCG----CGA--ACUaGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.