miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23193 5' -62.7 NC_005259.1 + 17934 0.66 0.446963
Target:  5'- aAUCGAGCaGCgCC-UCGGUGGcaugGCCCa -3'
miRNA:   3'- cUGGCUCGcCG-GGcAGCCGCUa---CGGG- -5'
23193 5' -62.7 NC_005259.1 + 51685 0.72 0.176673
Target:  5'- cGCCGAGCGGuacCCCGagGGUG-UGCCg -3'
miRNA:   3'- cUGGCUCGCC---GGGCagCCGCuACGGg -5'
23193 5' -62.7 NC_005259.1 + 8191 0.72 0.176673
Target:  5'- -cCCGAGgcCGGaaaUCGUCGGCGAUGCUg -3'
miRNA:   3'- cuGGCUC--GCCg--GGCAGCCGCUACGGg -5'
23193 5' -62.7 NC_005259.1 + 50276 0.71 0.193866
Target:  5'- cAUCGGGCcGCCCGgcaucgguaagucgUCGGUGGUGCUCg -3'
miRNA:   3'- cUGGCUCGcCGGGC--------------AGCCGCUACGGG- -5'
23193 5' -62.7 NC_005259.1 + 56463 0.71 0.200247
Target:  5'- aGCCGAGCGaGCCCcaCGGCauUGCCg -3'
miRNA:   3'- cUGGCUCGC-CGGGcaGCCGcuACGGg -5'
23193 5' -62.7 NC_005259.1 + 15832 0.71 0.205278
Target:  5'- aGGCCGAucucgccaccGCcGCCCGUC-GCGGUGUCCc -3'
miRNA:   3'- -CUGGCU----------CGcCGGGCAGcCGCUACGGG- -5'
23193 5' -62.7 NC_005259.1 + 49043 0.71 0.210419
Target:  5'- -uCCGcaacGGCGGCUCGgCGGUgugGGUGCCCg -3'
miRNA:   3'- cuGGC----UCGCCGGGCaGCCG---CUACGGG- -5'
23193 5' -62.7 NC_005259.1 + 28864 0.71 0.21567
Target:  5'- --gCGGGCGaGCucgCCGUCGGUugucGGUGCCCg -3'
miRNA:   3'- cugGCUCGC-CG---GGCAGCCG----CUACGGG- -5'
23193 5' -62.7 NC_005259.1 + 54962 0.7 0.221033
Target:  5'- cAUCGAGCGGCagcgcaUCGUCGGCGAcGagaCCa -3'
miRNA:   3'- cUGGCUCGCCG------GGCAGCCGCUaCg--GG- -5'
23193 5' -62.7 NC_005259.1 + 52581 0.72 0.176673
Target:  5'- cACCGAG-GuGCCCGUCGaGCG--GCCCa -3'
miRNA:   3'- cUGGCUCgC-CGGGCAGC-CGCuaCGGG- -5'
23193 5' -62.7 NC_005259.1 + 41613 0.73 0.158407
Target:  5'- uGACCG-GCGGCggUGUCGGCagcggcggcagcucGGUGCCCg -3'
miRNA:   3'- -CUGGCuCGCCGg-GCAGCCG--------------CUACGGG- -5'
23193 5' -62.7 NC_005259.1 + 12625 0.74 0.136475
Target:  5'- aGCCGucGCgGGCCgCGUCGGCugaucgucucgauGGUGCCCg -3'
miRNA:   3'- cUGGCu-CG-CCGG-GCAGCCG-------------CUACGGG- -5'
23193 5' -62.7 NC_005259.1 + 58555 0.81 0.035892
Target:  5'- cAUCGAGUGGCUCGaCGGCGGUGUCCu -3'
miRNA:   3'- cUGGCUCGCCGGGCaGCCGCUACGGG- -5'
23193 5' -62.7 NC_005259.1 + 8718 0.81 0.04228
Target:  5'- uGCCGGGCGGCCaucguCGUCGGUGcgGCCa -3'
miRNA:   3'- cUGGCUCGCCGG-----GCAGCCGCuaCGGg -5'
23193 5' -62.7 NC_005259.1 + 21830 0.77 0.08084
Target:  5'- cACCGuAGCGGCgaagGUCGGCGGUGCCg -3'
miRNA:   3'- cUGGC-UCGCCGgg--CAGCCGCUACGGg -5'
23193 5' -62.7 NC_005259.1 + 27911 0.76 0.089688
Target:  5'- aGCCGgucguagucGGCGGUCggcgguaugacgaUGUCGGCGGUGCCCg -3'
miRNA:   3'- cUGGC---------UCGCCGG-------------GCAGCCGCUACGGG- -5'
23193 5' -62.7 NC_005259.1 + 61599 0.76 0.092346
Target:  5'- aGACCcgcaaCGGCauccucgucgCCGUCGGCGGUGCCCg -3'
miRNA:   3'- -CUGGcuc--GCCG----------GGCAGCCGCUACGGG- -5'
23193 5' -62.7 NC_005259.1 + 8465 0.75 0.099978
Target:  5'- gGGCCGGGaCGcagccGCUCGUCGGC-AUGCCCg -3'
miRNA:   3'- -CUGGCUC-GC-----CGGGCAGCCGcUACGGG- -5'
23193 5' -62.7 NC_005259.1 + 28232 0.74 0.126586
Target:  5'- -gUCGAGCaucuGCUCGUCGGCGAUGaCCUg -3'
miRNA:   3'- cuGGCUCGc---CGGGCAGCCGCUAC-GGG- -5'
23193 5' -62.7 NC_005259.1 + 1570 0.74 0.126586
Target:  5'- uGCCGGGCucacgcuuGaGCgCGUCGGgGAUGCCCu -3'
miRNA:   3'- cUGGCUCG--------C-CGgGCAGCCgCUACGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.